data_RY0
# 
_chem_comp.id                                    RY0 
_chem_comp.name                                  "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-1-(4-chloranylphenoxy)cyclobutane-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 Cl N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-09 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        425.931 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RY0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BYE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RY0 C02  C1  C  0 1 N N N -20.468 -16.152 -6.650 7.523  -0.903 -0.227 C02  RY0 1  
RY0 C04  C2  C  0 1 Y N N -20.172 -17.624 -6.568 6.167  -0.544 0.216  C04  RY0 2  
RY0 C05  C3  C  0 1 Y N N -19.184 -18.137 -5.691 5.086  -0.446 -0.587 C05  RY0 3  
RY0 C06  C4  C  0 1 Y N N -19.105 -19.625 -5.862 3.926  -0.091 0.087  C06  RY0 4  
RY0 C07  C5  C  0 1 Y N N -20.000 -20.094 -6.858 4.083  0.091  1.413  C07  RY0 5  
RY0 C09  C6  C  0 1 Y N N -18.088 -20.417 -5.082 2.620  0.075  -0.597 C09  RY0 6  
RY0 C10  C7  C  0 1 Y N N -17.578 -21.546 -5.682 2.519  -0.132 -1.972 C10  RY0 7  
RY0 C11  C8  C  0 1 Y N N -16.602 -22.280 -5.039 1.303  0.023  -2.607 C11  RY0 8  
RY0 C12  C9  C  0 1 Y N N -16.139 -21.858 -3.817 0.182  0.384  -1.883 C12  RY0 9  
RY0 C13  C10 C  0 1 Y N N -16.647 -20.717 -3.234 0.273  0.592  -0.512 C13  RY0 10 
RY0 C15  C11 C  0 1 N N N -16.091 -19.064 -1.365 -1.857 1.644  -0.382 C15  RY0 11 
RY0 C17  C12 C  0 1 N N N -15.358 -18.953 -0.022 -3.016 2.157  0.433  C17  RY0 12 
RY0 C18  C13 C  0 1 N N N -15.612 -17.713 0.803  -4.171 2.709  -0.419 C18  RY0 13 
RY0 C19  C14 C  0 1 N N N -14.159 -17.305 0.659  -3.459 4.071  -0.361 C19  RY0 14 
RY0 C20  C15 C  0 1 N N N -13.933 -18.491 -0.236 -2.816 3.590  0.954  C20  RY0 15 
RY0 C22  C16 C  0 1 Y N N -16.412 -20.592 1.280  -4.048 0.097  1.019  C22  RY0 16 
RY0 C23  C17 C  0 1 Y N N -17.633 -19.928 1.394  -4.475 -0.845 1.943  C23  RY0 17 
RY0 C24  C18 C  0 1 Y N N -18.692 -20.537 2.067  -5.101 -1.999 1.513  C24  RY0 18 
RY0 C25  C19 C  0 1 Y N N -18.469 -21.802 2.612  -5.302 -2.215 0.161  C25  RY0 19 
RY0 C27  C20 C  0 1 Y N N -17.274 -22.424 2.483  -4.877 -1.276 -0.762 C27  RY0 20 
RY0 C28  C21 C  0 1 Y N N -16.246 -21.830 1.826  -4.252 -0.121 -0.336 C28  RY0 21 
RY0 C29  C22 C  0 1 Y N N -17.616 -19.958 -3.874 1.490  0.432  0.134  C29  RY0 22 
RY0 N01  N1  N  0 1 N N N -21.103 -15.704 -7.868 7.754  -1.151 -1.489 N01  RY0 23 
RY0 N03  N2  N  0 1 N N N -20.093 -15.335 -5.750 8.553  -0.972 0.689  N03  RY0 24 
RY0 N14  N3  N  0 1 N N N -16.071 -20.373 -1.964 -0.864 0.957  0.217  N14  RY0 25 
RY0 O16  O1  O  0 1 N N N -16.604 -18.137 -1.904 -1.818 1.848  -1.577 O16  RY0 26 
RY0 O21  O2  O  0 1 N N N -15.269 -20.111 0.632  -3.437 1.236  1.441  O21  RY0 27 
RY0 S08  S1  S  0 1 Y N N -20.848 -18.828 -7.443 5.703  -0.185 1.873  S08  RY0 28 
RY0 CL26 CL1 CL 0 0 N N N -19.692 -22.745 3.477  -6.089 -3.666 -0.377 CL26 RY0 29 
RY0 H051 H1  H  0 0 N N N -18.585 -17.551 -5.010 5.121  -0.625 -1.651 H051 RY0 30 
RY0 H071 H2  H  0 0 N N N -20.103 -21.121 -7.177 3.291  0.368  2.093  H071 RY0 31 
RY0 H101 H3  H  0 0 N N N -17.940 -21.856 -6.651 3.393  -0.414 -2.540 H101 RY0 32 
RY0 H111 H4  H  0 0 N N N -16.206 -23.177 -5.492 1.227  -0.137 -3.672 H111 RY0 33 
RY0 H121 H5  H  0 0 N N N -15.372 -22.424 -3.309 -0.767 0.505  -2.385 H121 RY0 34 
RY0 H181 H6  H  0 0 N N N -16.322 -17.009 0.345  -4.217 2.283  -1.421 H181 RY0 35 
RY0 H182 H7  H  0 0 N N N -15.918 -17.920 1.839  -5.134 2.697  0.091  H182 RY0 36 
RY0 H192 H8  H  0 0 N N N -13.587 -17.332 1.598  -2.741 4.223  -1.168 H192 RY0 37 
RY0 H191 H9  H  0 0 N N N -14.010 -16.333 0.167  -4.138 4.914  -0.234 H191 RY0 38 
RY0 H201 H10 H  0 0 N N N -13.175 -19.195 0.139  -3.409 3.820  1.839  H201 RY0 39 
RY0 H202 H11 H  0 0 N N N -13.702 -18.225 -1.278 -1.769 3.875  1.059  H202 RY0 40 
RY0 H231 H12 H  0 0 N N N -17.758 -18.946 0.963  -4.318 -0.677 2.998  H231 RY0 41 
RY0 H241 H13 H  0 0 N N N -19.650 -20.047 2.163  -5.433 -2.734 2.232  H241 RY0 42 
RY0 H271 H14 H  0 0 N N N -17.137 -23.407 2.909  -5.035 -1.447 -1.817 H271 RY0 43 
RY0 H281 H15 H  0 0 N N N -15.297 -22.338 1.736  -3.920 0.612  -1.057 H281 RY0 44 
RY0 H291 H16 H  0 0 N N N -17.986 -19.041 -3.440 1.562  0.589  1.200  H291 RY0 45 
RY0 H011 H17 H  0 0 N N N -21.199 -14.709 -7.897 8.649  -1.387 -1.781 H011 RY0 46 
RY0 H1   H18 H  0 1 N N N -19.584 -15.666 -4.955 8.382  -0.784 1.626  H1   RY0 47 
RY0 H031 H19 H  0 0 N N N -20.307 -14.362 -5.837 9.447  -1.209 0.398  H031 RY0 48 
RY0 H141 H20 H  0 0 N N N -15.618 -21.104 -1.453 -0.937 0.716  1.154  H141 RY0 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RY0 N01 C02  DOUB N N 1  
RY0 S08 C07  SING Y N 2  
RY0 S08 C04  SING Y N 3  
RY0 C07 C06  DOUB Y N 4  
RY0 C02 C04  SING N N 5  
RY0 C02 N03  SING N N 6  
RY0 C04 C05  DOUB Y N 7  
RY0 C06 C05  SING Y N 8  
RY0 C06 C09  SING N N 9  
RY0 C10 C09  DOUB Y N 10 
RY0 C10 C11  SING Y N 11 
RY0 C09 C29  SING Y N 12 
RY0 C11 C12  DOUB Y N 13 
RY0 C29 C13  DOUB Y N 14 
RY0 C12 C13  SING Y N 15 
RY0 C13 N14  SING N N 16 
RY0 N14 C15  SING N N 17 
RY0 O16 C15  DOUB N N 18 
RY0 C15 C17  SING N N 19 
RY0 C20 C17  SING N N 20 
RY0 C20 C19  SING N N 21 
RY0 C17 O21  SING N N 22 
RY0 C17 C18  SING N N 23 
RY0 O21 C22  SING N N 24 
RY0 C19 C18  SING N N 25 
RY0 C22 C23  DOUB Y N 26 
RY0 C22 C28  SING Y N 27 
RY0 C23 C24  SING Y N 28 
RY0 C28 C27  DOUB Y N 29 
RY0 C24 C25  DOUB Y N 30 
RY0 C27 C25  SING Y N 31 
RY0 C25 CL26 SING N N 32 
RY0 C05 H051 SING N N 33 
RY0 C07 H071 SING N N 34 
RY0 C10 H101 SING N N 35 
RY0 C11 H111 SING N N 36 
RY0 C12 H121 SING N N 37 
RY0 C18 H181 SING N N 38 
RY0 C18 H182 SING N N 39 
RY0 C19 H192 SING N N 40 
RY0 C19 H191 SING N N 41 
RY0 C20 H201 SING N N 42 
RY0 C20 H202 SING N N 43 
RY0 C23 H231 SING N N 44 
RY0 C24 H241 SING N N 45 
RY0 C27 H271 SING N N 46 
RY0 C28 H281 SING N N 47 
RY0 C29 H291 SING N N 48 
RY0 N01 H011 SING N N 49 
RY0 N03 H1   SING N N 50 
RY0 N03 H031 SING N N 51 
RY0 N14 H141 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RY0 InChI            InChI                1.06    "InChI=1S/C22H20ClN3O2S/c23-16-5-7-18(8-6-16)28-22(9-2-10-22)21(27)26-17-4-1-3-14(11-17)15-12-19(20(24)25)29-13-15/h1,3-8,11-13H,2,9-10H2,(H3,24,25)(H,26,27)" 
RY0 InChIKey         InChI                1.06    RSYXQFCNAHJFNA-UHFFFAOYSA-N                                                                                                                                    
RY0 SMILES_CANONICAL CACTVS               3.385   "NC(=N)c1scc(c1)c2cccc(NC(=O)C3(CCC3)Oc4ccc(Cl)cc4)c2"                                                                                                         
RY0 SMILES           CACTVS               3.385   "NC(=N)c1scc(c1)c2cccc(NC(=O)C3(CCC3)Oc4ccc(Cl)cc4)c2"                                                                                                         
RY0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C(\c1cc(cs1)c2cccc(c2)NC(=O)C3(CCC3)Oc4ccc(cc4)Cl)/N"                                                                                                   
RY0 SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(cc(c1)NC(=O)C2(CCC2)Oc3ccc(cc3)Cl)c4cc(sc4)C(=N)N"                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           RY0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-1-(4-chloranylphenoxy)cyclobutane-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RY0 "Create component"   2022-12-09 PDBE 
RY0 "Other modification" 2022-12-13 PDBE 
RY0 "Initial release"    2023-08-02 RCSB 
# 
