data_MN0
#

_chem_comp.id                                   MN0
_chem_comp.name                                 "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H21 N O10"
_chem_comp.mon_nstd_parent_comp_id              SIA
_chem_comp.pdbx_synonyms                        
;methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl
3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl
3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-07-21
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.296
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MN0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3SIS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  MN0  "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid"  PDB  ?  
2  MN0  "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid"        PDB  ?  
3  MN0  "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MN0  C1    C1    C  0  1  N  N  N   3.373  47.239   6.250  -1.658  -2.033  -1.257  C1    MN0   1  
MN0  C2    C2    C  0  1  N  N  R   1.877  46.933   6.538  -1.444  -1.838   0.222  C2    MN0   2  
MN0  O2    O2    O  0  1  N  N  N   1.565  47.359   7.896  -2.518  -2.446   0.943  O2    MN0   3  
MN0  C3    C3    C  0  1  N  N  N   0.992  47.747   5.567  -0.120  -2.486   0.636  C3    MN0   4  
MN0  C4    C4    C  0  1  N  N  S   1.026  47.186   4.132   1.031  -1.788  -0.096  C4    MN0   5  
MN0  O4    O4    O  0  1  N  N  N   0.076  47.867   3.306   2.276  -2.339   0.338  O4    MN0   6  
MN0  C5    C5    C  0  1  N  N  R   0.730  45.691   4.099   0.991  -0.291   0.223  C5    MN0   7  
MN0  N5    N5    N  0  1  N  N  N   0.802  45.247   2.692   2.042   0.398  -0.531  N5    MN0   8  
MN0  C6    C6    C  0  1  N  N  R   1.694  44.949   5.037  -0.376   0.272  -0.175  C6    MN0   9  
MN0  O6    O6    O  0  1  N  N  N   1.564  45.518   6.389  -1.403  -0.441   0.518  O6    MN0  10  
MN0  C7    C7    C  0  1  N  N  R   1.524  43.448   5.269  -0.445   1.755   0.195  C7    MN0  11  
MN0  O7    O7    O  0  1  N  N  N   0.171  43.152   5.626  -0.146   1.914   1.583  O7    MN0  12  
MN0  C8    C8    C  0  1  N  N  R   2.467  42.961   6.384  -1.851   2.286  -0.088  C8    MN0  13  
MN0  O8    O8    O  0  1  N  N  N   3.748  43.582   6.229  -2.151   2.127  -1.476  O8    MN0  14  
MN0  C9    C9    C  0  1  N  N  N   2.639  41.450   6.343  -1.920   3.769   0.282  C9    MN0  15  
MN0  O9    O9    O  0  1  N  N  N   3.340  41.035   7.515  -3.262   4.236   0.129  O9    MN0  16  
MN0  C10   C10   C  0  1  N  N  N   0.013  44.293   2.192   3.295   0.458  -0.038  C10   MN0  17  
MN0  O10   O10   O  0  1  N  N  N  -0.797  43.657   2.864   3.553  -0.057   1.029  O10   MN0  18  
MN0  C11   C11   C  0  1  N  N  N   0.147  43.945   0.712   4.376   1.167  -0.813  C11   MN0  19  
MN0  O11   O11   O  0  1  N  N  N   1.023  44.667  -0.040   5.606   1.095  -0.089  O11   MN0  20  
MN0  C12   C12   C  0  1  N  N  N   1.439  46.316   8.923  -2.470  -2.223   2.354  C12   MN0  21  
MN0  O1B   O1B   O  0  1  N  N  N   3.701  48.435   6.121  -0.727  -1.618  -2.130  O1B   MN0  22  
MN0  O1A   O1A   O  0  1  N  N  N   4.166  46.272   6.176  -2.666  -2.568  -1.656  O1A   MN0  23  
MN0  H32   H3    H  0  1  N  N  N  -0.046  47.715   5.930   0.016  -2.380   1.713  H32   MN0  24  
MN0  H31   H3A   H  0  1  N  N  N   1.359  48.784   5.546  -0.133  -3.543   0.373  H31   MN0  25  
MN0  H4    H4    H  0  1  N  N  N   2.044  47.349   3.748   0.922  -1.936  -1.170  H4    MN0  26  
MN0  HO4   HO4   H  0  1  N  Y  N   0.108  47.511   2.426   2.366  -3.287   0.173  HO4   MN0  27  
MN0  H5    H5    H  0  1  N  N  N  -0.280  45.462   4.470   1.150  -0.141   1.291  H5    MN0  28  
MN0  HN5   HN5   H  0  1  N  N  N   1.471  45.680   2.088   1.836   0.810  -1.384  HN5   MN0  29  
MN0  H6    H6    H  0  1  N  N  N   2.649  45.079   4.507  -0.516   0.159  -1.250  H6    MN0  30  
MN0  H7    H7    H  0  1  N  N  N   1.777  42.926   4.334   0.280   2.312  -0.399  H7    MN0  31  
MN0  HO7   HO7   H  0  1  N  Y  N  -0.386  43.246   4.862  -0.752   1.444   2.172  HO7   MN0  32  
MN0  H8    H8    H  0  1  N  N  N   2.022  43.235   7.352  -2.576   1.729   0.506  H8    MN0  33  
MN0  HO8   HO8   H  0  1  N  Y  N   3.646  44.526   6.240  -1.544   2.597  -2.066  HO8   MN0  34  
MN0  H92   H9    H  0  1  N  N  N   1.652  40.965   6.310  -1.606   3.900   1.318  H92   MN0  35  
MN0  H91   H9A   H  0  1  N  N  N   3.212  41.166   5.448  -1.260   4.338  -0.373  H91   MN0  36  
MN0  HO9   HO9   H  0  1  N  Y  N   3.453  40.092   7.500  -3.380   5.171   0.347  HO9   MN0  37  
MN0  H111  H11   H  0  0  N  N  N   0.477  42.897   0.663   4.498   0.689  -1.785  H111  MN0  38  
MN0  H12   H12   H  0  1  N  N  N   1.203  46.781   9.892  -3.370  -2.629   2.817  H12   MN0  39  
MN0  H12A  H12A  H  0  0  N  N  N   0.632  45.622   8.644  -1.593  -2.717   2.771  H12A  MN0  40  
MN0  H12B  H12B  H  0  0  N  N  N   2.387  45.764   9.003  -2.413  -1.152   2.551  H12B  MN0  41  
MN0  H113  H19   H  0  0  N  N  N  -0.847  44.087   0.263   4.098   2.211  -0.953  H113  MN0  42  
MN0  H20   H20   H  0  1  N  N  N   1.008  44.350  -0.935   6.348   1.531  -0.530  H20   MN0  43  
MN0  HO1B  HO1B  H  0  0  N  N  N   4.636  48.492   5.960  -0.909  -1.765  -3.068  HO1B  MN0  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MN0  C1   C2    SING  N  N   1  
MN0  C2   O2    SING  N  N   2  
MN0  O2   C12   SING  N  N   3  
MN0  C3   C2    SING  N  N   4  
MN0  C3   H32   SING  N  N   5  
MN0  C3   H31   SING  N  N   6  
MN0  C4   C3    SING  N  N   7  
MN0  C4   H4    SING  N  N   8  
MN0  O4   C4    SING  N  N   9  
MN0  O4   HO4   SING  N  N  10  
MN0  C5   C4    SING  N  N  11  
MN0  C5   C6    SING  N  N  12  
MN0  C5   H5    SING  N  N  13  
MN0  N5   C5    SING  N  N  14  
MN0  N5   HN5   SING  N  N  15  
MN0  C6   C7    SING  N  N  16  
MN0  C6   O6    SING  N  N  17  
MN0  C6   H6    SING  N  N  18  
MN0  O6   C2    SING  N  N  19  
MN0  C7   O7    SING  N  N  20  
MN0  C7   C8    SING  N  N  21  
MN0  C7   H7    SING  N  N  22  
MN0  O7   HO7   SING  N  N  23  
MN0  C8   H8    SING  N  N  24  
MN0  O8   C8    SING  N  N  25  
MN0  O8   HO8   SING  N  N  26  
MN0  C9   C8    SING  N  N  27  
MN0  C9   O9    SING  N  N  28  
MN0  C9   H92   SING  N  N  29  
MN0  C9   H91   SING  N  N  30  
MN0  O9   HO9   SING  N  N  31  
MN0  C10  N5    SING  N  N  32  
MN0  C10  O10   DOUB  N  N  33  
MN0  C11  C10   SING  N  N  34  
MN0  C11  H111  SING  N  N  35  
MN0  O11  C11   SING  N  N  36  
MN0  C12  H12   SING  N  N  37  
MN0  C12  H12A  SING  N  N  38  
MN0  C12  H12B  SING  N  N  39  
MN0  O1B  C1    SING  N  N  40  
MN0  O1A  C1    DOUB  N  N  41  
MN0  C11  H113  SING  N  N  42  
MN0  O11  H20   SING  N  N  43  
MN0  O1B  HO1B  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MN0  SMILES            ACDLabs               12.01  "O=C(O)C1(OC)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO"  
MN0  InChI             InChI                 1.03   "InChI=1S/C12H21NO10/c1-22-12(11(20)21)2-5(16)8(13-7(18)4-15)10(23-12)9(19)6(17)3-14/h5-6,8-10,14-17,19H,2-4H2,1H3,(H,13,18)(H,20,21)/t5-,6+,8+,9+,10+,12+/m0/s1"  
MN0  InChIKey          InChI                 1.03   NFUCYHODBBSMAK-BLMTXZDNSA-N  
MN0  SMILES_CANONICAL  CACTVS                3.370  "CO[C@@]1(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O"  
MN0  SMILES            CACTVS                3.370  "CO[C]1(C[CH](O)[CH](NC(=O)CO)[CH](O1)[CH](O)[CH](O)CO)C(O)=O"  
MN0  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O"  
MN0  SMILES            "OpenEye OEToolkits"  1.7.2  "COC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)CO)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MN0  "SYSTEMATIC NAME"            ACDLabs               12.01  "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  
MN0  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.2  
;(2R,4S,5R,6R)-2-methoxy-4-oxidanyl-5-(2-oxidanylethanoylamino)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic
 acid
;
  
MN0  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    "2-O-methyl-5-N-glycolyl-a-D-neuraminic acid"  
#
_pdbx_chem_comp_related.comp_id            MN0
_pdbx_chem_comp_related.related_comp_id    SIA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  MN0  C1    SIA  C1    "Carbohydrate core"  
 2  MN0  C10   SIA  C10   "Carbohydrate core"  
 3  MN0  C11   SIA  C11   "Carbohydrate core"  
 4  MN0  C2    SIA  C2    "Carbohydrate core"  
 5  MN0  C3    SIA  C3    "Carbohydrate core"  
 6  MN0  C4    SIA  C4    "Carbohydrate core"  
 7  MN0  C5    SIA  C5    "Carbohydrate core"  
 8  MN0  C6    SIA  C6    "Carbohydrate core"  
 9  MN0  C7    SIA  C7    "Carbohydrate core"  
10  MN0  C8    SIA  C8    "Carbohydrate core"  
11  MN0  C9    SIA  C9    "Carbohydrate core"  
12  MN0  N5    SIA  N5    "Carbohydrate core"  
13  MN0  O10   SIA  O10   "Carbohydrate core"  
14  MN0  O1A   SIA  O1A   "Carbohydrate core"  
15  MN0  O1B   SIA  O1B   "Carbohydrate core"  
16  MN0  O2    SIA  O2    "Carbohydrate core"  
17  MN0  O4    SIA  O4    "Carbohydrate core"  
18  MN0  O6    SIA  O6    "Carbohydrate core"  
19  MN0  O7    SIA  O7    "Carbohydrate core"  
20  MN0  O8    SIA  O8    "Carbohydrate core"  
21  MN0  O9    SIA  O9    "Carbohydrate core"  
22  MN0  H111  SIA  H111  "Carbohydrate core"  
23  MN0  H113  SIA  H113  "Carbohydrate core"  
24  MN0  H32   SIA  H32   "Carbohydrate core"  
25  MN0  H31   SIA  H31   "Carbohydrate core"  
26  MN0  H4    SIA  H4    "Carbohydrate core"  
27  MN0  H5    SIA  H5    "Carbohydrate core"  
28  MN0  H6    SIA  H6    "Carbohydrate core"  
29  MN0  H7    SIA  H7    "Carbohydrate core"  
30  MN0  H8    SIA  H8    "Carbohydrate core"  
31  MN0  H92   SIA  H92   "Carbohydrate core"  
32  MN0  H91   SIA  H91   "Carbohydrate core"  
33  MN0  HN5   SIA  HN5   "Carbohydrate core"  
34  MN0  HO1B  SIA  HO1B  "Carbohydrate core"  
35  MN0  HO4   SIA  HO4   "Carbohydrate core"  
36  MN0  HO7   SIA  HO7   "Carbohydrate core"  
37  MN0  HO8   SIA  HO8   "Carbohydrate core"  
38  MN0  HO9   SIA  HO9   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MN0  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
MN0  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
MN0  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
MN0  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MN0  "Create component"          2011-07-21  RCSB  
MN0  "Modify atom id"            2011-09-21  RCSB  
MN0  "Other modification"        2020-07-03  RCSB  
MN0  "Modify parent residue"     2020-07-17  RCSB  
MN0  "Modify synonyms"           2020-07-17  RCSB  
MN0  "Modify atom id"            2020-07-17  RCSB  
MN0  "Modify component atom id"  2020-07-17  RCSB  
MN0  "Modify leaving atom flag"  2020-07-17  RCSB  
##
