data_M40
# 
_chem_comp.id                                    M40 
_chem_comp.name                                  "(1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H35 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.615 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4XBC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M40 O01 O1  O 0 1 N N N N N N 36.485 36.637 15.145 2.608  0.574  1.214  O01 M40 1  
M40 C02 C1  C 0 1 N N N N N N 37.248 37.549 15.483 2.674  -0.226 0.303  C02 M40 2  
M40 O03 O2  O 0 1 N N N N N N 37.593 37.747 16.803 3.864  -0.742 -0.057 O03 M40 3  
M40 C04 C2  C 0 1 N N N N N N 37.030 36.993 17.830 5.028  -0.296 0.689  C04 M40 4  
M40 C05 C3  C 0 1 Y N N N N N 37.946 35.966 18.433 6.260  -0.975 0.150  C05 M40 5  
M40 C06 C4  C 0 1 Y N N N N N 39.156 36.356 19.024 6.980  -0.389 -0.875 C06 M40 6  
M40 C07 C5  C 0 1 Y N N N N N 40.004 35.393 19.571 8.111  -1.012 -1.370 C07 M40 7  
M40 C08 C6  C 0 1 Y N N N N N 39.651 34.063 19.522 8.522  -2.221 -0.840 C08 M40 8  
M40 C09 C7  C 0 1 Y N N N N N 38.441 33.677 18.930 7.802  -2.807 0.184  C09 M40 9  
M40 C10 C8  C 0 1 Y N N N N N 37.588 34.637 18.395 6.674  -2.181 0.683  C10 M40 10 
M40 N11 N1  N 0 1 N N N N N N 38.107 38.276 14.546 1.553  -0.602 -0.346 N11 M40 11 
M40 C12 C9  C 0 1 N N S N N N 37.895 38.007 13.159 0.257  -0.046 0.049  C12 M40 12 
M40 C13 C10 C 0 1 N N N N N N 38.522 39.123 12.368 0.041  1.294  -0.657 C13 M40 13 
M40 C14 C11 C 0 1 N N N N N N 37.925 40.544 12.488 1.081  2.303  -0.167 C14 M40 14 
M40 C15 C12 C 0 1 N N N N N N 38.709 41.473 11.625 0.944  3.603  -0.962 C15 M40 15 
M40 C16 C13 C 0 1 N N N N N N 38.111 42.859 11.587 1.985  4.613  -0.471 C16 M40 16 
M40 C17 C14 C 0 1 N N N N N N 36.664 42.832 11.291 1.758  4.897  1.015  C17 M40 17 
M40 C18 C15 C 0 1 N N N N N N 35.882 41.918 12.199 1.894  3.597  1.810  C18 M40 18 
M40 C19 C16 C 0 1 N N N N N N 36.467 40.551 12.145 0.854  2.588  1.319  C19 M40 19 
M40 C20 C17 C 0 1 N N N N N N 38.567 36.751 12.798 -0.840 -1.002 -0.341 C20 M40 20 
M40 N21 N2  N 0 1 N N N N N N 37.934 35.955 11.805 -2.126 -0.698 -0.075 N21 M40 21 
M40 C22 C18 C 0 1 N N S N N N 38.475 34.687 11.351 -3.193 -1.628 -0.454 C22 M40 22 
M40 C23 C19 C 0 1 N N N N N N 37.592 33.566 11.798 -4.407 -1.406 0.450  C23 M40 23 
M40 C24 C20 C 0 1 N N S N N N 37.438 33.413 13.359 -4.066 -1.837 1.878  C24 M40 24 
M40 C25 C21 C 0 1 N N N N N N 38.758 33.169 14.035 -5.289 -1.652 2.806  C25 M40 25 
M40 C26 C22 C 0 1 N N N N N N 38.371 32.355 15.271 -5.031 -0.245 3.389  C26 M40 26 
M40 N27 N3  N 0 1 N N N N N N 37.110 31.684 14.925 -3.578 -0.051 3.314  N27 M40 27 
M40 C28 C23 C 0 1 N N N N N N 36.554 32.297 13.763 -3.011 -0.928 2.468  C28 M40 28 
M40 O29 O3  O 0 1 N N N N N N 35.515 31.939 13.268 -1.827 -0.982 2.214  O29 M40 29 
M40 O31 O4  O 0 1 N N N N N N 39.612 35.581 9.521  -4.707 -2.207 -2.246 O31 M40 30 
M40 O32 O5  O 0 1 N N N N N N 39.614 36.408 13.319 -0.566 -2.046 -0.894 O32 M40 31 
M40 H1  H1  H 0 1 N N N N N N 36.716 37.682 18.628 5.133  0.784  0.586  H1  M40 32 
M40 H3  H3  H 0 1 N N N N N N 39.431 37.400 19.056 6.659  0.555  -1.289 H3  M40 33 
M40 H10 H10 H 0 1 N N N N N N 38.468 38.838 11.307 0.145  1.158  -1.734 H10 M40 34 
M40 H11 H11 H 0 1 N N N N N N 39.576 39.187 12.678 -0.960 1.665  -0.434 H11 M40 35 
M40 H12 H12 H 0 1 N N N N N N 38.035 40.866 13.534 2.080  1.893  -0.310 H12 M40 36 
M40 H13 H13 H 0 1 N N N N N N 38.734 41.070 10.602 1.106  3.401  -2.020 H13 M40 37 
M40 H14 H14 H 0 1 N N N N N N 39.734 41.540 12.017 -0.055 4.014  -0.819 H14 M40 38 
M40 H15 H15 H 0 1 N N N N N N 38.622 43.444 10.808 2.984  4.202  -0.614 H15 M40 39 
M40 H16 H16 H 0 1 N N N N N N 38.264 43.338 12.565 1.887  5.539  -1.038 H16 M40 40 
M40 H17 H17 H 0 1 N N N N N N 36.267 43.852 11.399 2.499  5.616  1.364  H17 M40 41 
M40 H18 H18 H 0 1 N N N N N N 36.527 42.493 10.254 0.758  5.307  1.158  H18 M40 42 
M40 H19 H19 H 0 1 N N N N N N 35.929 42.297 13.231 2.894  3.187  1.667  H19 M40 43 
M40 H20 H20 H 0 1 N N N N N N 34.833 41.882 11.869 1.732  3.800  2.868  H20 M40 44 
M40 H21 H21 H 0 1 N N N N N N 35.932 39.909 12.860 -0.146 2.998  1.462  H21 M40 45 
M40 H22 H22 H 0 1 N N N N N N 36.341 40.152 11.128 0.951  1.662  1.886  H22 M40 46 
M40 H23 H23 H 0 1 N N N N N N 37.079 36.283 11.402 -2.345 0.137  0.368  H23 M40 47 
M40 H24 H24 H 0 1 N N N N N N 38.844 34.637 10.316 -2.838 -2.652 -0.341 H24 M40 48 
M40 H25 H25 H 0 1 N N N N N N 36.591 33.731 11.372 -4.677 -0.350 0.444  H25 M40 49 
M40 H26 H26 H 0 1 N N N N N N 38.008 32.627 11.404 -5.246 -1.997 0.082  H26 M40 50 
M40 H27 H27 H 0 1 N N N N N N 37.018 34.354 13.745 -3.728 -2.873 1.892  H27 M40 51 
M40 H28 H28 H 0 1 N N N N N N 39.436 32.598 13.383 -6.218 -1.673 2.236  H28 M40 52 
M40 H29 H29 H 0 1 N N N N N N 39.236 34.117 14.321 -5.299 -2.405 3.593  H29 M40 53 
M40 H30 H30 H 0 1 N N N N N N 39.150 31.613 15.501 -5.544 0.510  2.795  H30 M40 54 
M40 H31 H31 H 0 1 N N N N N N 38.228 33.017 16.137 -5.366 -0.200 4.426  H31 M40 55 
M40 H32 H32 H 0 1 N N N N N N 36.706 30.918 15.425 -3.090 0.624  3.811  H32 M40 56 
M40 H35 H35 H 0 1 N N N N N N 39.989 35.864 8.696  -4.540 -3.154 -2.151 H35 M40 57 
M40 S1  S1  S 0 1 N Y N N N N ?      ?      ?      -4.037 0.362  -2.130 S1  M40 58 
M40 O2  O6  O 0 1 N Y N N N N ?      ?      ?      -4.127 0.684  -3.511 O2  M40 59 
M40 O3  O7  O 0 1 N Y N N N N ?      ?      ?      -2.817 1.131  -1.644 O3  M40 60 
M40 O4  O8  O 0 1 N Y N N N N ?      ?      ?      -5.067 0.730  -1.223 O4  M40 61 
M40 C30 C30 C 0 1 N Y N N N N ?      ?      ?      -3.589 -1.382 -1.911 C30 M40 62 
M40 H4  H4  H 0 1 N N N N N N 36.149 36.472 17.428 4.904  -0.551 1.742  H4  M40 63 
M40 H2  H2  H 0 1 N N N N N N 40.935 35.690 20.032 8.673  -0.554 -2.170 H2  M40 64 
M40 H5  H5  H 0 1 N N N N N N 40.308 33.315 19.941 9.405  -2.707 -1.227 H5  M40 65 
M40 H6  H6  H 0 1 N N N N N N 38.170 32.632 18.889 8.123  -3.752 0.598  H6  M40 66 
M40 H7  H7  H 0 1 N N N N N N 36.649 34.341 17.952 6.115  -2.637 1.486  H7  M40 67 
M40 H8  H8  H 0 1 N N N N N N 38.802 38.923 14.859 1.605  -1.241 -1.074 H8  M40 68 
M40 H9  H9  H 0 1 N N N N N N 36.821 37.945 12.930 0.240  0.106  1.129  H9  M40 69 
M40 H33 H33 H 0 1 N Y N N N N ?      ?      ?      -2.909 2.092  -1.701 H33 M40 70 
M40 H34 H34 H 0 1 N N N N N N ?      ?      ?      -2.750 -1.626 -2.562 H34 M40 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M40 O31 C30 SING N N 1  
M40 C30 C22 SING N N 2  
M40 C17 C16 SING N N 3  
M40 C17 C18 SING N N 4  
M40 C22 C23 SING N N 5  
M40 C22 N21 SING N N 6  
M40 C16 C15 SING N N 7  
M40 C15 C14 SING N N 8  
M40 C23 C24 SING N N 9  
M40 N21 C20 SING N N 10 
M40 C19 C18 SING N N 11 
M40 C19 C14 SING N N 12 
M40 C13 C14 SING N N 13 
M40 C13 C12 SING N N 14 
M40 C20 C12 SING N N 15 
M40 C20 O32 DOUB N N 16 
M40 C12 N11 SING N N 17 
M40 O29 C28 DOUB N N 18 
M40 C24 C28 SING N N 19 
M40 C24 C25 SING N N 20 
M40 C28 N27 SING N N 21 
M40 C25 C26 SING N N 22 
M40 N11 C02 SING N N 23 
M40 N27 C26 SING N N 24 
M40 O01 C02 DOUB N N 25 
M40 C02 O03 SING N N 26 
M40 O03 C04 SING N N 27 
M40 C04 C05 SING N N 28 
M40 C10 C05 DOUB Y N 29 
M40 C10 C09 SING Y N 30 
M40 C05 C06 SING Y N 31 
M40 C09 C08 DOUB Y N 32 
M40 C06 C07 DOUB Y N 33 
M40 C08 C07 SING Y N 34 
M40 C04 H1  SING N N 35 
M40 C06 H3  SING N N 36 
M40 C13 H10 SING N N 37 
M40 C13 H11 SING N N 38 
M40 C14 H12 SING N N 39 
M40 C15 H13 SING N N 40 
M40 C15 H14 SING N N 41 
M40 C16 H15 SING N N 42 
M40 C16 H16 SING N N 43 
M40 C17 H17 SING N N 44 
M40 C17 H18 SING N N 45 
M40 C18 H19 SING N N 46 
M40 C18 H20 SING N N 47 
M40 C19 H21 SING N N 48 
M40 C19 H22 SING N N 49 
M40 N21 H23 SING N N 50 
M40 C22 H24 SING N N 51 
M40 C23 H25 SING N N 52 
M40 C23 H26 SING N N 53 
M40 C24 H27 SING N N 54 
M40 C25 H28 SING N N 55 
M40 C25 H29 SING N N 56 
M40 C26 H30 SING N N 57 
M40 C26 H31 SING N N 58 
M40 N27 H32 SING N N 59 
M40 O31 H35 SING N N 60 
M40 S1  O2  DOUB N N 61 
M40 S1  O3  SING N N 62 
M40 S1  O4  DOUB N N 63 
M40 S1  C30 SING N N 64 
M40 C04 H4  SING N N 65 
M40 C07 H2  SING N N 66 
M40 C08 H5  SING N N 67 
M40 C09 H6  SING N N 68 
M40 C10 H7  SING N N 69 
M40 N11 H8  SING N N 70 
M40 C12 H9  SING N N 71 
M40 O3  H33 SING N N 72 
M40 C30 H34 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M40 SMILES           ACDLabs              12.01 "O=C(OCc1ccccc1)NC(C(=O)NC(CC2C(=O)NCC2)C(O)S(=O)(=O)O)CC3CCCCC3"                                                                                                                                                                                
M40 InChI            InChI                1.03  "InChI=1S/C24H35N3O8S/c28-21-18(11-12-25-21)14-20(23(30)36(32,33)34)26-22(29)19(13-16-7-3-1-4-8-16)27-24(31)35-15-17-9-5-2-6-10-17/h2,5-6,9-10,16,18-20,23,30H,1,3-4,7-8,11-15H2,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t18-,19?,20?,23?/m0/s1" 
M40 InChIKey         InChI                1.03  JRFNCWJMGHZHFL-VJWVULDSSA-N                                                                                                                                                                                                                      
M40 SMILES_CANONICAL CACTVS               3.385 "OC([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"                                                                                                                                                                   
M40 SMILES           CACTVS               3.385 "OC([CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"                                                                                                                                                                       
M40 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COC(=O)NC(CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C(O)S(=O)(=O)O"                                                                                                                                                                      
M40 SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)COC(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)C(O)S(=O)(=O)O"                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M40 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                
M40 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[3-cyclohexyl-2-(phenylmethoxycarbonylamino)propanoyl]amino]-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M40 "Create component" 2014-12-18 RCSB 
M40 "Initial release"  2015-03-25 RCSB 
M40 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            M40 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C30 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
