data_LD0
# 
_chem_comp.id                                    LD0 
_chem_comp.name                                  "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H19 N5 O5 S3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LD0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U49 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LD0 C15 C1  C 0 1 N N N N N N -50.491 14.221 36.728 -0.491 -1.648 -1.510 C15 LD0 1  
LD0 C17 C2  C 0 1 N N R N N N -51.813 14.694 34.528 -1.250 -0.591 0.601  C17 LD0 2  
LD0 C20 C3  C 0 1 N N R N N N -53.280 12.296 33.397 -3.981 0.732  0.421  C20 LD0 3  
LD0 C21 C4  C 0 1 N N N N N N -51.991 12.150 33.813 -2.836 1.747  0.521  C21 LD0 4  
LD0 C01 C5  C 0 1 N N N N N N -53.437 17.870 40.582 5.924  -3.477 -0.311 C01 LD0 5  
LD0 C04 C6  C 0 1 N N N N N N -54.476 15.584 38.364 3.581  -0.770 0.042  C04 LD0 6  
LD0 C05 C7  C 0 1 Y N N N N N -55.689 15.283 37.412 3.634  0.698  0.210  C05 LD0 7  
LD0 C06 C8  C 0 1 Y N N N N N -56.852 16.077 37.361 4.782  1.396  0.112  C06 LD0 8  
LD0 C08 C9  C 0 1 Y N N N N N -56.784 14.089 35.776 2.716  2.706  0.591  C08 LD0 9  
LD0 C11 C10 C 0 1 N N N N N N -53.094 14.997 37.981 2.274  -1.469 0.035  C11 LD0 10 
LD0 C14 C11 C 0 1 N N R N N N -51.814 13.981 35.909 -0.160 -1.442 -0.054 C14 LD0 11 
LD0 C19 C12 C 0 1 N N S N N N -53.791 13.902 33.031 -3.607 -0.543 1.179  C19 LD0 12 
LD0 C23 C13 C 0 1 N N N N N N -54.307 11.348 33.963 -4.233 0.394  -1.050 C23 LD0 13 
LD0 C25 C14 C 0 1 N N N N N N -54.917 14.138 31.913 -4.823 -1.425 1.294  C25 LD0 14 
LD0 N03 N1  N 0 1 N N N N N N -54.588 16.288 39.390 4.684  -1.449 -0.100 N03 LD0 15 
LD0 N09 N2  N 0 1 Y N N N N N -55.699 14.229 36.538 2.546  1.428  0.464  N09 LD0 16 
LD0 N10 N3  N 0 1 N N N N N N -57.023 13.048 34.784 1.712  3.622  0.858  N10 LD0 17 
LD0 N13 N4  N 0 1 N N N N N N -53.007 14.567 36.568 1.130  -0.758 0.062  N13 LD0 18 
LD0 N18 N5  N 0 1 N N N N N N -53.312 15.023 33.971 -2.547 -1.272 0.480  N18 LD0 19 
LD0 O02 O1  O 0 1 N N N N N N -53.448 16.525 40.190 4.643  -2.864 -0.153 O02 LD0 20 
LD0 O12 O2  O 0 1 N N N N N N -52.208 14.904 38.733 2.235  -2.683 0.006  O12 LD0 21 
LD0 O16 O3  O 0 1 N N N N N N -49.887 15.262 36.602 0.274  -1.267 -2.362 O16 LD0 22 
LD0 O26 O4  O 0 1 N N N N N N -54.781 13.623 30.737 -4.964 -2.360 0.541  O26 LD0 23 
LD0 O27 O5  O 0 1 N N N N N N -55.963 14.821 32.180 -5.749 -1.174 2.233  O27 LD0 24 
LD0 S07 S1  S 0 1 Y N N N N N -57.835 15.354 36.186 4.418  3.100  0.373  S07 LD0 25 
LD0 S22 S2  S 0 1 N N N N N N -51.215 13.676 33.643 -1.352 1.020  -0.236 S22 LD0 26 
LD0 S24 S3  S 0 1 N N N N N N -55.545 11.115 32.674 -4.825 1.873  -1.918 S24 LD0 27 
LD0 H1  H1  H 0 1 N N N N N N -50.124 13.459 37.400 -1.411 -2.140 -1.790 H1  LD0 28 
LD0 H2  H2  H 0 1 N N N N N N -51.215 15.617 34.562 -1.012 -0.441 1.655  H2  LD0 29 
LD0 H3  H3  H 0 1 N N N N N N -53.212 11.908 32.370 -4.885 1.161  0.854  H3  LD0 30 
LD0 H4  H4  H 0 1 N N N N N N -51.970 11.834 34.866 -3.108 2.659  -0.010 H4  LD0 31 
LD0 H5  H5  H 0 1 N N N N N N -51.480 11.398 33.194 -2.643 1.977  1.569  H5  LD0 32 
LD0 H6  H6  H 0 1 N N N N N N -52.552 18.063 41.206 6.378  -3.134 -1.240 H6  LD0 33 
LD0 H7  H7  H 0 1 N N N N N N -53.404 18.512 39.689 6.563  -3.205 0.529  H7  LD0 34 
LD0 H8  H8  H 0 1 N N N N N N -54.347 18.091 41.159 5.806  -4.560 -0.342 H8  LD0 35 
LD0 H9  H9  H 0 1 N N N N N N -57.070 16.958 37.946 5.759  0.982  -0.092 H9  LD0 36 
LD0 H10 H10 H 0 1 N N N N N N -51.953 12.900 35.760 -0.105 -2.409 0.446  H10 LD0 37 
LD0 H11 H11 H 0 1 N N N N N N -52.967 14.061 32.320 -3.263 -0.277 2.179  H11 LD0 38 
LD0 H12 H12 H 0 1 N N N N N N -54.770 11.781 34.862 -3.306 0.051  -1.508 H12 LD0 39 
LD0 H13 H13 H 0 1 N N N N N N -53.838 10.387 34.219 -4.985 -0.392 -1.118 H13 LD0 40 
LD0 H14 H14 H 0 1 N N N N N N -57.920 13.186 34.365 1.924  4.565  0.938  H14 LD0 41 
LD0 H15 H15 H 0 1 N N N N N N -56.315 13.091 34.079 0.796  3.321  0.965  H15 LD0 42 
LD0 H16 H16 H 0 1 N N N N N N -53.826 14.682 36.006 1.160  0.207  0.157  H16 LD0 43 
LD0 H17 H17 H 0 1 N N N N N N -53.295 15.889 33.470 -2.488 -2.224 0.807  H17 LD0 44 
LD0 H19 H19 H 0 1 N N N N N N -56.527 14.850 31.416 -6.511 -1.768 2.268  H19 LD0 45 
LD0 H20 H20 H 0 1 N N N N N N -56.378 10.295 33.244 -5.001 1.435  -3.177 H20 LD0 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LD0 O26 C25 DOUB N N 1  
LD0 C25 O27 SING N N 2  
LD0 C25 C19 SING N N 3  
LD0 S24 C23 SING N N 4  
LD0 C19 C20 SING N N 5  
LD0 C19 N18 SING N N 6  
LD0 C20 C21 SING N N 7  
LD0 C20 C23 SING N N 8  
LD0 S22 C21 SING N N 9  
LD0 S22 C17 SING N N 10 
LD0 N18 C17 SING N N 11 
LD0 C17 C14 SING N N 12 
LD0 N10 C08 SING N N 13 
LD0 C08 S07 SING Y N 14 
LD0 C08 N09 DOUB Y N 15 
LD0 C14 N13 SING N N 16 
LD0 C14 C15 SING N N 17 
LD0 S07 C06 SING Y N 18 
LD0 N09 C05 SING Y N 19 
LD0 N13 C11 SING N N 20 
LD0 O16 C15 DOUB N N 21 
LD0 C06 C05 DOUB Y N 22 
LD0 C05 C04 SING N N 23 
LD0 C11 C04 SING N N 24 
LD0 C11 O12 DOUB N N 25 
LD0 C04 N03 DOUB N Z 26 
LD0 N03 O02 SING N N 27 
LD0 O02 C01 SING N N 28 
LD0 C15 H1  SING N N 29 
LD0 C17 H2  SING N N 30 
LD0 C20 H3  SING N N 31 
LD0 C21 H4  SING N N 32 
LD0 C21 H5  SING N N 33 
LD0 C01 H6  SING N N 34 
LD0 C01 H7  SING N N 35 
LD0 C01 H8  SING N N 36 
LD0 C06 H9  SING N N 37 
LD0 C14 H10 SING N N 38 
LD0 C19 H11 SING N N 39 
LD0 C23 H12 SING N N 40 
LD0 C23 H13 SING N N 41 
LD0 N10 H14 SING N N 42 
LD0 N10 H15 SING N N 43 
LD0 N13 H16 SING N N 44 
LD0 N18 H17 SING N N 45 
LD0 O27 H19 SING N N 46 
LD0 S24 H20 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LD0 SMILES           ACDLabs              12.01 "SCC1CSC(NC1C(=O)O)C(C=O)NC(=O)C(=N\OC)/c1csc(N)n1"                                                                                                                                         
LD0 InChI            InChI                1.03  "InChI=1S/C14H19N5O5S3/c1-24-19-10(8-5-27-14(15)17-8)11(21)16-7(2-20)12-18-9(13(22)23)6(3-25)4-26-12/h2,5-7,9,12,18,25H,3-4H2,1H3,(H2,15,17)(H,16,21)(H,22,23)/b19-10-/t6-,7-,9+,12-/m1/s1" 
LD0 InChIKey         InChI                1.03  KKQVBXSQHHBKNE-AZYSTIKISA-N                                                                                                                                                                 
LD0 SMILES_CANONICAL CACTVS               3.385 "CO/N=C(C(=O)N[C@H](C=O)[C@@H]1N[C@@H]([C@H](CS)CS1)C(O)=O)/c2csc(N)n2"                                                                                                                     
LD0 SMILES           CACTVS               3.385 "CON=C(C(=O)N[CH](C=O)[CH]1N[CH]([CH](CS)CS1)C(O)=O)c2csc(N)n2"                                                                                                                             
LD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO/N=C(/c1csc(n1)N)\C(=O)N[C@H](C=O)[C@@H]2NC([C@@H](CS2)CS)C(=O)O"                                                                                                                        
LD0 SMILES           "OpenEye OEToolkits" 2.0.7 "CON=C(c1csc(n1)N)C(=O)NC(C=O)C2NC(C(CS2)CS)C(=O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LD0 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid"                       
LD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},5~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LD0 "Create component"   2022-03-01 RCSB 
LD0 "Modify value order" 2022-03-29 RCSB 
LD0 "Initial release"    2022-05-25 RCSB 
LD0 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LD0 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C15 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
