data_GY0
#

_chem_comp.id                                   GY0
_chem_comp.name                                 "methyl 3-[(E,3R,9R)-3,9-bis(oxidanyl)dec-4-enoyl]sulfanylpropanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H24 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-08
_chem_comp.pdbx_modified_date                   2021-01-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       304.402
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GY0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7D79
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY0  C02  C1   C  0  1  N  N  R  65.432  76.705   98.118  -7.379  -1.458   0.533  C02  GY0   1  
GY0  C03  C2   C  0  1  N  N  N  64.982  78.045   97.549  -6.779  -0.110   0.128  C03  GY0   2  
GY0  C04  C3   C  0  1  N  N  N  66.215  78.741   96.989  -5.303  -0.068   0.529  C04  GY0   3  
GY0  C05  C4   C  0  1  N  N  N  66.553  78.161   95.620  -4.703   1.279   0.124  C05  GY0   4  
GY0  C06  C5   C  0  1  N  N  N  65.638  78.846   94.615  -3.249   1.321   0.518  C06  GY0   5  
GY0  C07  C6   C  0  1  N  N  N  65.791  78.687   93.320  -2.334   1.588  -0.381  C07  GY0   6  
GY0  C08  C7   C  0  1  N  N  R  64.825  79.422   92.394  -0.880   1.629   0.013  C08  GY0   7  
GY0  C09  C8   C  0  1  N  N  N  65.542  80.508   91.587  -0.104   0.583  -0.789  C09  GY0   8  
GY0  C10  C9   C  0  1  N  N  N  66.700  81.142   92.363   1.324   0.539  -0.309  C10  GY0   9  
GY0  C12  C10  C  0  1  N  N  N  68.083  83.369   93.698   3.921  -0.153  -0.072  C12  GY0  10  
GY0  C13  C11  C  0  1  N  N  N  68.735  83.831   92.394   5.083  -1.026  -0.553  C13  GY0  11  
GY0  C14  C12  C  0  1  N  N  N  65.286  76.710   99.636  -8.882  -1.454   0.247  C14  GY0  12  
GY0  C17  C13  C  0  1  N  N  N  70.102  84.452   92.692   6.320  -0.699   0.243  C17  GY0  13  
GY0  C19  C14  C  0  1  N  N  N  72.089  85.463   91.948   8.620  -0.979   0.799  C19  GY0  14  
GY0  O01  O1   O  0  1  N  N  N  64.660  75.680   97.561  -6.754  -2.502  -0.216  O01  GY0  15  
GY0  O15  O2   O  0  1  N  N  N  64.240  78.498   91.522  -0.350   2.928  -0.258  O15  GY0  16  
GY0  O16  O3   O  0  1  N  N  N  67.783  80.663   92.321   1.685   1.272   0.587  O16  GY0  17  
GY0  O18  O4   O  0  1  N  N  N  71.066  84.544   91.680   7.469  -1.346  -0.007  O18  GY0  18  
GY0  O20  O5   O  0  1  N  N  N  70.346  84.854   93.780   6.277   0.146   1.106  O20  GY0  19  
GY0  S11  S1   S  0  1  N  N  N  66.450  82.651   93.341   2.436  -0.546  -1.029  S11  GY0  20  
GY0  H1   H1   H  0  1  N  N  N  66.494  76.559   97.870  -7.213  -1.625   1.597  H1   GY0  21  
GY0  H2   H2   H  0  1  N  N  N  64.533  78.659   98.344  -6.867   0.017  -0.951  H2   GY0  22  
GY0  H3   H3   H  0  1  N  N  N  64.245  77.885   96.748  -7.316   0.693   0.634  H3   GY0  23  
GY0  H4   H4   H  0  1  N  N  N  67.064  78.587   97.671  -5.215  -0.196   1.607  H4   GY0  24  
GY0  H5   H5   H  0  1  N  N  N  66.014  79.818   96.891  -4.767  -0.872   0.023  H5   GY0  25  
GY0  H6   H6   H  0  1  N  N  N  66.376  77.075   95.614  -4.791   1.407  -0.955  H6   GY0  26  
GY0  H7   H7   H  0  1  N  N  N  67.606  78.363   95.373  -5.239   2.082   0.629  H7   GY0  27  
GY0  H8   H8   H  0  1  N  N  N  64.842  79.480   94.976  -2.961   1.130   1.541  H8   GY0  28  
GY0  H9   H9   H  0  1  N  N  N  66.574  78.057   92.924  -2.622   1.778  -1.404  H9   GY0  29  
GY0  H10  H10  H  0  1  N  N  N  64.052  79.903   93.011  -0.786   1.413   1.078  H10  GY0  30  
GY0  H11  H11  H  0  1  N  N  N  64.817  81.294   91.330  -0.564  -0.396  -0.652  H11  GY0  31  
GY0  H12  H12  H  0  1  N  N  N  65.939  80.059   90.665  -0.124   0.848  -1.847  H12  GY0  32  
GY0  H13  H13  H  0  1  N  N  N  68.720  82.611   94.177   3.735  -0.346   0.984  H13  GY0  33  
GY0  H14  H14  H  0  1  N  N  N  67.965  84.229   94.373   4.175   0.898  -0.211  H14  GY0  34  
GY0  H15  H15  H  0  1  N  N  N  68.091  84.579   91.909   4.829  -2.077  -0.414  H15  GY0  35  
GY0  H16  H16  H  0  1  N  N  N  68.864  82.968   91.724   5.269  -0.833  -1.610  H16  GY0  36  
GY0  H17  H17  H  0  1  N  N  N  65.612  75.740  100.039  -9.049  -1.287  -0.817  H17  GY0  37  
GY0  H18  H18  H  0  1  N  N  N  65.907  77.512  100.061  -9.310  -2.414   0.535  H18  GY0  38  
GY0  H19  H19  H  0  1  N  N  N  64.233  76.882   99.902  -9.359  -0.658   0.819  H19  GY0  39  
GY0  H20  H20  H  0  1  N  N  N  72.801  85.475   91.109   9.481  -1.575   0.495  H20  GY0  40  
GY0  H21  H21  H  0  1  N  N  N  71.656  86.466   92.076   8.842   0.078   0.656  H21  GY0  41  
GY0  H22  H22  H  0  1  N  N  N  72.613  85.170   92.869   8.402  -1.165   1.850  H22  GY0  42  
GY0  H23  H23  H  0  1  N  N  N  64.940  74.844   97.915  -6.862  -2.418  -1.174  H23  GY0  43  
GY0  H24  H24  H  0  1  N  N  N  63.796  77.825   92.024  -0.400   3.187  -1.189  H24  GY0  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY0  O15  C08  SING  N  N   1  
GY0  C09  C10  SING  N  N   2  
GY0  C09  C08  SING  N  N   3  
GY0  O18  C19  SING  N  N   4  
GY0  O18  C17  SING  N  N   5  
GY0  O16  C10  DOUB  N  N   6  
GY0  C10  S11  SING  N  N   7  
GY0  C08  C07  SING  N  N   8  
GY0  C13  C17  SING  N  N   9  
GY0  C13  C12  SING  N  N  10  
GY0  C17  O20  DOUB  N  N  11  
GY0  C07  C06  DOUB  N  E  12  
GY0  S11  C12  SING  N  N  13  
GY0  C06  C05  SING  N  N  14  
GY0  C05  C04  SING  N  N  15  
GY0  C04  C03  SING  N  N  16  
GY0  C03  C02  SING  N  N  17  
GY0  O01  C02  SING  N  N  18  
GY0  C02  C14  SING  N  N  19  
GY0  C02  H1   SING  N  N  20  
GY0  C03  H2   SING  N  N  21  
GY0  C03  H3   SING  N  N  22  
GY0  C04  H4   SING  N  N  23  
GY0  C04  H5   SING  N  N  24  
GY0  C05  H6   SING  N  N  25  
GY0  C05  H7   SING  N  N  26  
GY0  C06  H8   SING  N  N  27  
GY0  C07  H9   SING  N  N  28  
GY0  C08  H10  SING  N  N  29  
GY0  C09  H11  SING  N  N  30  
GY0  C09  H12  SING  N  N  31  
GY0  C12  H13  SING  N  N  32  
GY0  C12  H14  SING  N  N  33  
GY0  C13  H15  SING  N  N  34  
GY0  C13  H16  SING  N  N  35  
GY0  C14  H17  SING  N  N  36  
GY0  C14  H18  SING  N  N  37  
GY0  C14  H19  SING  N  N  38  
GY0  C19  H20  SING  N  N  39  
GY0  C19  H21  SING  N  N  40  
GY0  C19  H22  SING  N  N  41  
GY0  O01  H23  SING  N  N  42  
GY0  O15  H24  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY0  InChI             InChI                 1.03   "InChI=1S/C14H24O5S/c1-11(15)6-4-3-5-7-12(16)10-14(18)20-9-8-13(17)19-2/h5,7,11-12,15-16H,3-4,6,8-10H2,1-2H3/b7-5+/t11-,12+/m1/s1"  
GY0  InChIKey          InChI                 1.03   ALEAPVQZLMYNNX-BAEOLTKYSA-N  
GY0  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)CCSC(=O)C[C@@H](O)\C=C\CCC[C@@H](C)O"  
GY0  SMILES            CACTVS                3.385  "COC(=O)CCSC(=O)C[CH](O)C=CCCC[CH](C)O"  
GY0  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](CCC/C=C/[C@@H](CC(=O)SCCC(=O)OC)O)O"  
GY0  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(CCCC=CC(CC(=O)SCCC(=O)OC)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          GY0
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl 3-[(~{E},3~{R},9~{R})-3,9-bis(oxidanyl)dec-4-enoyl]sulfanylpropanoate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY0  "Create component"  2020-10-08  PDBJ  
GY0  "Initial release"   2021-01-27  RCSB  
##
