data_D50
#

_chem_comp.id                                   D50
_chem_comp.name                                 "N-{(2S,3R)-3-amino-4-[4-(benzyloxy)phenyl]-2-hydroxybutanoyl}-L-leucine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H30 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Bestatin derivative 7d"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-01-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       414.495
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D50
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3Q44
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D50  C1    C1    C  0  1  N  N  N  17.242   9.078   7.036    6.737  -1.826   3.011  C1    D50   1  
D50  N1    N1    N  0  1  N  N  N  15.425  10.778  10.582    4.067  -0.081   0.155  N1    D50   2  
D50  O1    O1    O  0  1  N  N  N  13.939   9.619  11.724    4.447   1.301  -1.539  O1    D50   3  
D50  C2    C2    C  0  1  N  N  N  16.342   9.029   8.241    6.328  -1.003   1.787  C2    D50   4  
D50  N2    N2    N  0  1  N  N  N  11.246  12.743  11.984    1.147   0.978  -1.395  N2    D50   5  
D50  O2    O2    O  0  1  N  N  N  12.817  12.197   9.893    2.860   3.236  -0.802  O2    D50   6  
D50  C3    C3    C  0  1  N  N  N  15.812   7.600   8.450    7.579  -0.441   1.110  C3    D50   7  
D50  O3    O3    O  0  1  N  N  N  12.154  10.180  18.604   -4.685   0.091   0.675  O3    D50   8  
D50  C4    C4    C  0  1  N  N  N  17.169   9.540   9.417    5.572  -1.897   0.802  C4    D50   9  
D50  O4    O4    O  0  1  N  N  N  17.102  10.743  12.649    5.091  -2.906  -1.979  O4    D50  10  
D50  C5    C5    C  0  1  N  N  S  16.349   9.664  10.669    5.044  -1.046  -0.355  C5    D50  11  
D50  O5    O5    O  0  1  N  N  N  18.075   8.816  12.141    3.216  -1.785  -1.646  O5    D50  12  
D50  C6    C6    C  0  1  N  N  N  14.266  10.685  11.169    3.841   1.067  -0.515  C6    D50  13  
D50  C7    C7    C  0  1  N  N  S  13.449  11.982  11.186    2.836   2.060   0.010  C7    D50  14  
D50  C8    C8    C  0  1  N  N  R  12.436  11.906  12.317    1.438   1.440  -0.031  C8    D50  15  
D50  C9    C9    C  0  1  N  N  N  13.131  12.511  13.514    0.403   2.489   0.383  C9    D50  16  
D50  C10   C10   C  0  1  Y  N  N  12.838  11.865  14.841   -0.958   1.847   0.461  C10   D50  17  
D50  C11   C11   C  0  1  Y  N  N  13.269  10.560  15.131   -1.390   1.287   1.649  C11   D50  18  
D50  C12   C12   C  0  1  Y  N  N  13.023  10.008  16.384   -2.638   0.699   1.724  C12   D50  19  
D50  C13   C13   C  0  1  Y  N  N  12.369  10.742  17.348   -3.457   0.670   0.605  C13   D50  20  
D50  C14   C14   C  0  1  N  N  N  11.028  10.406  19.446   -5.475   0.098  -0.516  C14   D50  21  
D50  C15   C15   C  0  1  Y  N  N  11.128   9.411  20.578   -6.793  -0.582  -0.248  C15   D50  22  
D50  C16   C16   C  0  1  Y  N  N  10.814   9.790  21.887   -7.874   0.156   0.197  C16   D50  23  
D50  C17   C17   C  0  1  Y  N  N  10.911   8.866  22.927   -9.083  -0.468   0.442  C17   D50  24  
D50  C18   C18   C  0  1  Y  N  N  11.327   7.562  22.660   -9.210  -1.830   0.243  C18   D50  25  
D50  C19   C19   C  0  1  Y  N  N  11.654   7.162  21.358   -8.130  -2.568  -0.202  C19   D50  26  
D50  C20   C20   C  0  1  Y  N  N  11.546   8.102  20.321   -6.922  -1.943  -0.453  C20   D50  27  
D50  C21   C21   C  0  1  Y  N  N  11.962  12.037  17.060   -3.022   1.232  -0.586  C21   D50  28  
D50  C22   C22   C  0  1  Y  N  N  12.193  12.621  15.807   -1.776   1.825  -0.654  C22   D50  29  
D50  C23   C23   C  0  1  N  N  N  17.205   9.775  11.894    4.383  -1.939  -1.374  C23   D50  30  
D50  H1    H1    H  0  1  N  N  N  17.614  10.104   6.897    7.350  -1.213   3.672  H1    D50  31  
D50  H1A   H1A   H  0  1  N  N  N  18.092   8.397   7.186    5.844  -2.154   3.543  H1A   D50  32  
D50  H1B   H1B   H  0  1  N  N  N  16.677   8.769   6.144    7.308  -2.697   2.689  H1B   D50  33  
D50  HN1   HN1   H  0  1  N  N  N  15.674  11.606  10.079    3.582  -0.268   0.974  HN1   D50  34  
D50  H2    H2    H  0  1  N  N  N  15.449   9.660   8.122    5.684  -0.182   2.100  H2    D50  35  
D50  HN2   HN2   H  0  1  N  N  N  10.582  12.691  12.730    0.256   0.507  -1.435  HN2   D50  36  
D50  HN2A  HN2A  H  0  0  N  N  N  11.532  13.693  11.858    1.181   1.743  -2.052  HN2A  D50  37  
D50  HO2   HO2   H  0  1  N  N  N  12.314  13.003   9.916    2.646   3.077  -1.731  HO2   D50  38  
D50  H3    H3    H  0  1  N  N  N  15.156   7.577   9.333    8.223  -1.263   0.796  H3    D50  39  
D50  H3A   H3A   H  0  1  N  N  N  15.243   7.287   7.562    7.288   0.145   0.238  H3A   D50  40  
D50  H3B   H3B   H  0  1  N  N  N  16.658   6.914   8.604    8.118   0.196   1.812  H3B   D50  41  
D50  H4    H4    H  0  1  N  N  N  17.990   8.832   9.603    6.246  -2.660   0.413  H4    D50  42  
D50  H4A   H4A   H  0  1  N  N  N  17.571  10.531   9.160    4.736  -2.375   1.312  H4A   D50  43  
D50  HO4   HO4   H  0  1  N  N  N  17.719  10.653  13.366    4.624  -3.453  -2.625  HO4   D50  44  
D50  H5    H5    H  0  1  N  N  N  15.764   8.737  10.762    5.872  -0.513  -0.822  H5    D50  45  
D50  H7    H7    H  0  1  N  N  N  14.105  12.847  11.366    3.087   2.322   1.038  H7    D50  46  
D50  H8    H8    H  0  1  N  N  N  12.100  10.874  12.495    1.394   0.595   0.656  H8    D50  47  
D50  H9    H9    H  0  1  N  N  N  14.214  12.429  13.341    0.669   2.896   1.358  H9    D50  48  
D50  H9A   H9A   H  0  1  N  N  N  12.812  13.562  13.583    0.385   3.292  -0.354  H9A   D50  49  
D50  H11   H11   H  0  1  N  N  N  13.792   9.985  14.381   -0.751   1.310   2.520  H11   D50  50  
D50  H12   H12   H  0  1  N  N  N  13.346   9.001  16.601   -2.974   0.261   2.652  H12   D50  51  
D50  H14   H14   H  0  1  N  N  N  11.041  11.434  19.836   -5.654   1.127  -0.827  H14   D50  52  
D50  H14A  H14A  H  0  0  N  N  N  10.093  10.257  18.885   -4.945  -0.434  -1.306  H14A  D50  53  
D50  H16   H16   H  0  1  N  N  N  10.495  10.801  22.093   -7.774   1.220   0.352  H16   D50  54  
D50  H17   H17   H  0  1  N  N  N  10.665   9.160  23.937   -9.927   0.108   0.790  H17   D50  55  
D50  H18   H18   H  0  1  N  N  N  11.398   6.850  23.469  -10.155  -2.318   0.435  H18   D50  56  
D50  H19   H19   H  0  1  N  N  N  11.982   6.153  21.156   -8.229  -3.632  -0.357  H19   D50  57  
D50  H20   H20   H  0  1  N  N  N  11.789   7.810  19.310   -6.079  -2.519  -0.804  H20   D50  58  
D50  H21   H21   H  0  1  N  N  N  11.454  12.610  17.821   -3.658   1.211  -1.459  H21   D50  59  
D50  H22   H22   H  0  1  N  N  N  11.877  13.633  15.600   -1.438   2.267  -1.579  H22   D50  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D50  C1   C2    SING  N  N   1  
D50  C1   H1    SING  N  N   2  
D50  C1   H1A   SING  N  N   3  
D50  C1   H1B   SING  N  N   4  
D50  N1   C5    SING  N  N   5  
D50  N1   C6    SING  N  N   6  
D50  N1   HN1   SING  N  N   7  
D50  C6   O1    DOUB  N  N   8  
D50  C2   C3    SING  N  N   9  
D50  C2   C4    SING  N  N  10  
D50  C2   H2    SING  N  N  11  
D50  N2   C8    SING  N  N  12  
D50  N2   HN2   SING  N  N  13  
D50  N2   HN2A  SING  N  N  14  
D50  O2   C7    SING  N  N  15  
D50  O2   HO2   SING  N  N  16  
D50  C3   H3    SING  N  N  17  
D50  C3   H3A   SING  N  N  18  
D50  C3   H3B   SING  N  N  19  
D50  C13  O3    SING  N  N  20  
D50  O3   C14   SING  N  N  21  
D50  C4   C5    SING  N  N  22  
D50  C4   H4    SING  N  N  23  
D50  C4   H4A   SING  N  N  24  
D50  C23  O4    SING  N  N  25  
D50  O4   HO4   SING  N  N  26  
D50  C5   C23   SING  N  N  27  
D50  C5   H5    SING  N  N  28  
D50  C23  O5    DOUB  N  N  29  
D50  C6   C7    SING  N  N  30  
D50  C7   C8    SING  N  N  31  
D50  C7   H7    SING  N  N  32  
D50  C8   C9    SING  N  N  33  
D50  C8   H8    SING  N  N  34  
D50  C9   C10   SING  N  N  35  
D50  C9   H9    SING  N  N  36  
D50  C9   H9A   SING  N  N  37  
D50  C10  C11   DOUB  Y  N  38  
D50  C10  C22   SING  Y  N  39  
D50  C11  C12   SING  Y  N  40  
D50  C11  H11   SING  N  N  41  
D50  C12  C13   DOUB  Y  N  42  
D50  C12  H12   SING  N  N  43  
D50  C21  C13   SING  Y  N  44  
D50  C14  C15   SING  N  N  45  
D50  C14  H14   SING  N  N  46  
D50  C14  H14A  SING  N  N  47  
D50  C20  C15   DOUB  Y  N  48  
D50  C15  C16   SING  Y  N  49  
D50  C16  C17   DOUB  Y  N  50  
D50  C16  H16   SING  N  N  51  
D50  C18  C17   SING  Y  N  52  
D50  C17  H17   SING  N  N  53  
D50  C19  C18   DOUB  Y  N  54  
D50  C18  H18   SING  N  N  55  
D50  C20  C19   SING  Y  N  56  
D50  C19  H19   SING  N  N  57  
D50  C20  H20   SING  N  N  58  
D50  C22  C21   DOUB  Y  N  59  
D50  C21  H21   SING  N  N  60  
D50  C22  H22   SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D50  SMILES            ACDLabs               12.01  "O=C(O)C(NC(=O)C(O)C(N)Cc2ccc(OCc1ccccc1)cc2)CC(C)C"  
D50  SMILES_CANONICAL  CACTVS                3.370  "CC(C)C[C@H](NC(=O)[C@@H](O)[C@H](N)Cc1ccc(OCc2ccccc2)cc1)C(O)=O"  
D50  SMILES            CACTVS                3.370  "CC(C)C[CH](NC(=O)[CH](O)[CH](N)Cc1ccc(OCc2ccccc2)cc1)C(O)=O"  
D50  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(C)C[C@@H](C(=O)O)NC(=O)[C@H]([C@@H](Cc1ccc(cc1)OCc2ccccc2)N)O"  
D50  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C)CC(C(=O)O)NC(=O)C(C(Cc1ccc(cc1)OCc2ccccc2)N)O"  
D50  InChI             InChI                 1.03   "InChI=1S/C23H30N2O5/c1-15(2)12-20(23(28)29)25-22(27)21(26)19(24)13-16-8-10-18(11-9-16)30-14-17-6-4-3-5-7-17/h3-11,15,19-21,26H,12-14,24H2,1-2H3,(H,25,27)(H,28,29)/t19-,20+,21+/m1/s1"  
D50  InChIKey          InChI                 1.03   UUNNUENETDBNPB-HKBOAZHASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D50  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{(2S,3R)-3-amino-4-[4-(benzyloxy)phenyl]-2-hydroxybutanoyl}-L-leucine"  
D50  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2S)-2-[[(2S,3R)-3-azanyl-2-hydroxy-4-(4-phenylmethoxyphenyl)butanoyl]amino]-4-methyl-pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D50  "Create component"      2011-01-11  RCSB  
D50  "Modify aromatic_flag"  2011-06-04  RCSB  
D50  "Modify descriptor"     2011-06-04  RCSB  
D50  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D50
_pdbx_chem_comp_synonyms.name        "Bestatin derivative 7d"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
