data_D40
#

_chem_comp.id                                   D40
_chem_comp.name                                 "~{tert}-butyl (2'~{S},3~{S})-2-oxidanylidene-2'-phenyl-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H24 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-20
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.438
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D40
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6K9H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D40  C22  C1   C  0  1  Y  N  N  -16.835  17.203  -2.269   0.374   1.055  -0.389  C22  D40   1  
D40  C27  C2   C  0  1  Y  N  N  -16.440  18.314  -3.004   0.025   1.726   0.768  C27  D40   2  
D40  C26  C3   C  0  1  Y  N  N  -16.637  19.591  -2.512   0.255   3.085   0.874  C26  D40   3  
D40  C25  C4   C  0  1  Y  N  N  -17.227  19.776  -1.281   0.833   3.773  -0.176  C25  D40   4  
D40  C24  C5   C  0  1  Y  N  N  -17.679  18.686  -0.568   1.183   3.102  -1.332  C24  D40   5  
D40  C23  C6   C  0  1  Y  N  N  -17.500  17.407  -1.066   0.952   1.743  -1.440  C23  D40   6  
D40  C20  C7   C  0  1  N  N  N  -21.189  15.708  -4.614  -4.992  -0.455  -1.370  C20  D40   7  
D40  C19  C8   C  0  1  N  N  N  -20.183  17.975  -4.285  -4.669   1.407   0.265  C19  D40   8  
D40  C18  C9   C  0  1  N  N  N  -21.132  16.748  -2.319  -5.838  -0.686   0.970  C18  D40   9  
D40  C17  C10  C  0  1  N  N  N  -20.431  16.617  -3.660  -4.720  -0.113   0.096  C17  D40  10  
D40  C14  C11  C  0  1  N  N  N  -18.727  14.919  -3.090  -2.355  -0.285  -0.175  C14  D40  11  
D40  C1   C12  C  0  1  Y  N  N  -16.672  14.501   1.818   4.058   1.331   0.927  C1   D40  12  
D40  C2   C13  C  0  1  Y  N  N  -15.624  15.096   2.503   5.063   0.605   0.315  C2   D40  13  
D40  C3   C14  C  0  1  Y  N  N  -14.569  15.673   1.814   4.786  -0.615  -0.267  C3   D40  14  
D40  C4   C15  C  0  1  Y  N  N  -14.584  15.638   0.421   3.490  -1.125  -0.242  C4   D40  15  
D40  C5   C16  C  0  1  Y  N  N  -15.631  15.043  -0.275   2.486  -0.385   0.377  C5   D40  16  
D40  C13  C17  C  0  1  N  N  N  -15.297  13.778  -2.483   0.614  -1.541   1.596  C13  D40  17  
D40  C12  C18  C  0  1  N  N  N  -16.769  13.469  -2.767  -0.873  -1.763   1.214  C12  D40  18  
D40  C6   C19  C  0  1  Y  N  N  -16.684  14.476   0.430   2.769   0.829   0.961  C6   D40  19  
D40  C8   C20  C  0  1  N  N  N  -14.013  15.912  -1.763   1.647  -2.434  -0.516  C8   D40  20  
D40  C10  C21  C  0  1  N  N  S  -16.374  15.833  -2.719   0.130  -0.428  -0.503  C10  D40  21  
D40  C9   C22  C  0  1  N  N  S  -15.342  15.144  -1.754   1.233  -1.197   0.229  C9   D40  22  
D40  N7   N1   N  0  1  N  N  N  -13.655  16.144  -0.478   2.968  -2.316  -0.752  N7   D40  23  
D40  N11  N2   N  0  1  N  N  N  -17.404  14.796  -2.832  -1.143  -0.779   0.149  N11  D40  24  
D40  O15  O1   O  0  1  N  N  N  -19.510  14.004  -3.007  -2.460   0.524  -1.076  O15  D40  25  
D40  O16  O2   O  0  1  N  N  N  -19.030  16.186  -3.401  -3.448  -0.687   0.499  O16  D40  26  
D40  O21  O3   O  0  1  N  N  N  -13.404  16.276  -2.757   0.931  -3.358  -0.841  O21  D40  27  
D40  H1   H1   H  0  1  N  N  N  -15.975  18.179  -3.969  -0.427   1.189   1.588  H1   D40  28  
D40  H2   H2   H  0  1  N  N  N  -16.327  20.446  -3.095  -0.019   3.609   1.778  H2   D40  29  
D40  H3   H3   H  0  1  N  N  N  -17.335  20.771  -0.876   1.012   4.835  -0.093  H3   D40  30  
D40  H4   H4   H  0  1  N  N  N  -18.174  18.830   0.381   1.635   3.639  -2.153  H4   D40  31  
D40  H5   H5   H  0  1  N  N  N  -17.881  16.560  -0.515   1.225   1.219  -2.343  H5   D40  32  
D40  H6   H6   H  0  1  N  N  N  -21.355  14.731  -4.136  -4.195  -0.047  -1.992  H6   D40  33  
D40  H7   H7   H  0  1  N  N  N  -22.159  16.164  -4.862  -5.028  -1.538  -1.490  H7   D40  34  
D40  H8   H8   H  0  1  N  N  N  -20.602  15.571  -5.534  -5.946  -0.024  -1.672  H8   D40  35  
D40  H9   H9   H  0  1  N  N  N  -19.634  18.611  -3.575  -5.623   1.838  -0.038  H9   D40  36  
D40  H10  H10  H  0  1  N  N  N  -19.589  17.853  -5.203  -4.475   1.651   1.309  H10  D40  37  
D40  H11  H11  H  0  1  N  N  N  -21.146  18.447  -4.531  -3.872   1.815  -0.358  H11  D40  38  
D40  H12  H12  H  0  1  N  N  N  -20.550  17.412  -1.664  -5.874  -1.768   0.850  H12  D40  39  
D40  H13  H13  H  0  1  N  N  N  -22.136  17.170  -2.470  -5.644  -0.442   2.014  H13  D40  40  
D40  H14  H14  H  0  1  N  N  N  -21.218  15.756  -1.852  -6.792  -0.254   0.667  H14  D40  41  
D40  H15  H15  H  0  1  N  N  N  -17.486  14.053   2.369   4.280   2.285   1.382  H15  D40  42  
D40  H16  H16  H  0  1  N  N  N  -15.630  15.110   3.583   6.070   0.995   0.291  H16  D40  43  
D40  H17  H17  H  0  1  N  N  N  -13.753  16.140   2.345   5.576  -1.176  -0.743  H17  D40  44  
D40  H18  H18  H  0  1  N  N  N  -14.851  13.005  -1.840   0.719  -0.709   2.293  H18  D40  45  
D40  H19  H19  H  0  1  N  N  N  -14.724  13.852  -3.419   1.053  -2.450   2.007  H19  D40  46  
D40  H20  H20  H  0  1  N  N  N  -17.205  12.866  -1.957  -1.021  -2.776   0.841  H20  D40  47  
D40  H21  H21  H  0  1  N  N  N  -16.879  12.935  -3.722  -1.516  -1.579   2.075  H21  D40  48  
D40  H22  H22  H  0  1  N  N  N  -17.507  14.018  -0.098   1.983   1.394   1.439  H22  D40  49  
D40  H23  H23  H  0  1  N  N  N  -15.882  15.945  -3.696   0.105  -0.721  -1.553  H23  D40  50  
D40  H24  H24  H  0  1  N  N  N  -12.820  16.623  -0.208   3.496  -2.981  -1.221  H24  D40  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D40  C20  C17  SING  N  N   1  
D40  C19  C17  SING  N  N   2  
D40  C17  O16  SING  N  N   3  
D40  C17  C18  SING  N  N   4  
D40  O16  C14  SING  N  N   5  
D40  C14  O15  DOUB  N  N   6  
D40  C14  N11  SING  N  N   7  
D40  C27  C26  DOUB  Y  N   8  
D40  C27  C22  SING  Y  N   9  
D40  N11  C12  SING  N  N  10  
D40  N11  C10  SING  N  N  11  
D40  C12  C13  SING  N  N  12  
D40  O21  C8   DOUB  N  N  13  
D40  C10  C22  SING  N  N  14  
D40  C10  C9   SING  N  N  15  
D40  C26  C25  SING  Y  N  16  
D40  C13  C9   SING  N  N  17  
D40  C22  C23  DOUB  Y  N  18  
D40  C8   C9   SING  N  N  19  
D40  C8   N7   SING  N  N  20  
D40  C9   C5   SING  N  N  21  
D40  C25  C24  DOUB  Y  N  22  
D40  C23  C24  SING  Y  N  23  
D40  N7   C4   SING  N  N  24  
D40  C5   C4   DOUB  Y  N  25  
D40  C5   C6   SING  Y  N  26  
D40  C4   C3   SING  Y  N  27  
D40  C6   C1   DOUB  Y  N  28  
D40  C3   C2   DOUB  Y  N  29  
D40  C1   C2   SING  Y  N  30  
D40  C27  H1   SING  N  N  31  
D40  C26  H2   SING  N  N  32  
D40  C25  H3   SING  N  N  33  
D40  C24  H4   SING  N  N  34  
D40  C23  H5   SING  N  N  35  
D40  C20  H6   SING  N  N  36  
D40  C20  H7   SING  N  N  37  
D40  C20  H8   SING  N  N  38  
D40  C19  H9   SING  N  N  39  
D40  C19  H10  SING  N  N  40  
D40  C19  H11  SING  N  N  41  
D40  C18  H12  SING  N  N  42  
D40  C18  H13  SING  N  N  43  
D40  C18  H14  SING  N  N  44  
D40  C1   H15  SING  N  N  45  
D40  C2   H16  SING  N  N  46  
D40  C3   H17  SING  N  N  47  
D40  C13  H18  SING  N  N  48  
D40  C13  H19  SING  N  N  49  
D40  C12  H20  SING  N  N  50  
D40  C12  H21  SING  N  N  51  
D40  C6   H22  SING  N  N  52  
D40  C10  H23  SING  N  N  53  
D40  N7   H24  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D40  InChI             InChI                 1.03   "InChI=1S/C22H24N2O3/c1-21(2,3)27-20(26)24-14-13-22(18(24)15-9-5-4-6-10-15)16-11-7-8-12-17(16)23-19(22)25/h4-12,18H,13-14H2,1-3H3,(H,23,25)/t18-,22-/m0/s1"  
D40  InChIKey          InChI                 1.03   FXVLEOBGAHQNAI-AVRDEDQJSA-N  
D40  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C@]2([C@@H]1c3ccccc3)C(=O)Nc4ccccc24"  
D40  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C]2([CH]1c3ccccc3)C(=O)Nc4ccccc24"  
D40  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CC[C@@]2([C@@H]1c3ccccc3)c4ccccc4NC2=O"  
D40  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CCC2(C1c3ccccc3)c4ccccc4NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          D40
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{tert}-butyl (2'~{S},3~{S})-2-oxidanylidene-2'-phenyl-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D40  "Create component"  2019-06-20  PDBJ  
D40  "Initial release"   2020-04-22  RCSB  
##
