data_PRDCC_002409
# 
_chem_comp.id                                    PRD_002409 
_chem_comp.name                                  UDP-MurNAc-pentapeptide 
_chem_comp.formula                               "C37 H58 N8 O26 P2 S" 
_chem_comp.formula_weight                        1124.907 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002409 N1  N1  N 0 1 N N N 6.971  -14.958 19.097 7.931   6.111  0.354  UDP 1 N1     polymer 1 1 1   ? ? ? 
PRD_002409 C1  C1  C 0 1 N N N 5.920  -15.415 19.864 7.104   7.090  0.765  UDP 1 C2     polymer 1 1 2   ? ? ? 
PRD_002409 N2  N2  N 0 1 N N N 5.653  -16.753 19.745 7.258   7.664  1.972  UDP 1 N3     polymer 1 1 3   ? ? ? 
PRD_002409 C2  C2  C 0 1 N N N 6.325  -17.662 18.951 8.249   7.264  2.794  UDP 1 C4     polymer 1 1 4   ? ? ? 
PRD_002409 C3  C3  C 0 1 N N N 7.411  -17.114 18.197 9.125   6.234  2.375  UDP 1 C5     polymer 1 1 5   ? ? ? 
PRD_002409 C4  C4  C 0 1 N N N 7.695  -15.804 18.292 8.949   5.676  1.158  UDP 1 C6     polymer 1 1 6   ? ? ? 
PRD_002409 O1  O1  O 0 1 N N N 5.264  -14.687 20.595 6.206   7.461  0.034  UDP 1 O2     polymer 1 1 7   ? ? ? 
PRD_002409 O2  O2  O 0 1 N N N 5.972  -18.847 18.949 8.388   7.783  3.887  UDP 1 O4     polymer 1 1 8   ? ? ? 
PRD_002409 C5  C5  C 0 1 N N R 7.323  -13.540 19.217 7.736   5.501  -0.963 UDP 1 "C1'"  polymer 1 1 9   ? ? ? 
PRD_002409 C6  C6  C 0 1 N N R 8.782  -13.308 19.581 8.941   5.804  -1.889 UDP 1 "C2'"  polymer 1 1 10  ? ? ? 
PRD_002409 O3  O3  O 0 1 N N N 8.982  -13.551 20.968 8.772   7.057  -2.554 UDP 1 "O2'"  polymer 1 1 11  ? ? ? 
PRD_002409 C7  C7  C 0 1 N N S 8.933  -11.837 19.178 8.878   4.631  -2.898 UDP 1 "C3'"  polymer 1 1 12  ? ? ? 
PRD_002409 C8  C8  C 0 1 N N R 7.932  -11.687 18.022 8.057   3.550  -2.169 UDP 1 "C4'"  polymer 1 1 13  ? ? ? 
PRD_002409 O4  O4  O 0 1 N N N 7.178  -12.922 17.971 7.742   4.061  -0.863 UDP 1 "O4'"  polymer 1 1 14  ? ? ? 
PRD_002409 O5  O5  O 0 1 N N N 8.541  -10.967 20.232 8.218   5.037  -4.097 UDP 1 "O3'"  polymer 1 1 15  ? ? ? 
PRD_002409 C9  C9  C 0 1 N N N 8.542  -11.415 16.675 8.881   2.267  -2.041 UDP 1 "C5'"  polymer 1 1 16  ? ? ? 
PRD_002409 O6  O6  O 0 1 N N N 9.139  -10.105 16.714 8.072   1.236  -1.470 UDP 1 "O5'"  polymer 1 1 17  ? ? ? 
PRD_002409 P1  P1  P 0 1 N N N 9.454  -9.333  15.389 8.618   -0.252 -1.191 UDP 1 PA     polymer 1 1 18  ? ? ? 
PRD_002409 O7  O7  O 0 1 N N N 8.168  -9.112  14.694 9.168   -0.819 -2.443 UDP 1 O1A    polymer 1 1 19  ? ? ? 
PRD_002409 O8  O8  O 0 1 N N N 10.317 -8.106  15.678 9.774   -0.199 -0.073 UDP 1 O2A    polymer 1 1 20  ? ? ? 
PRD_002409 O9  O9  O 0 1 N N N 10.357 -10.348 14.546 7.408   -1.178 -0.669 UDP 1 O3A    polymer 1 1 21  ? ? ? 
PRD_002409 P2  P2  P 0 1 N N N 11.753 -10.057 13.860 7.204   -2.767 -0.512 UDP 1 PB     polymer 1 1 22  ? ? ? 
PRD_002409 O10 O10 O 0 1 N N N 11.448 -8.962  12.850 8.412   -3.362 0.101  UDP 1 O1B    polymer 1 1 23  ? ? ? 
PRD_002409 O11 O11 O 0 1 N N N 12.087 -11.367 13.145 6.959   -3.423 -1.962 UDP 1 O3B    polymer 1 1 24  ? ? ? 
PRD_002409 C10 C10 C 0 1 N N S 13.414 -10.327 15.891 5.547   -4.367 0.844  MUB 2 C1     polymer 1 1 25  ? ? ? 
PRD_002409 C11 C11 C 0 1 N N R 13.695 -9.370  17.051 4.030   -4.419 1.041  MUB 2 C2     polymer 1 1 26  ? ? ? 
PRD_002409 C12 C12 C 0 1 N N R 14.641 -8.261  16.589 3.634   -3.445 2.155  MUB 2 C3     polymer 1 1 27  ? ? ? 
PRD_002409 C13 C13 C 0 1 N N S 15.847 -8.843  15.859 4.399   -3.808 3.432  MUB 2 C4     polymer 1 1 28  ? ? ? 
PRD_002409 C14 C14 C 0 1 N N R 15.378 -9.743  14.720 5.902   -3.779 3.142  MUB 2 C5     polymer 1 1 29  ? ? ? 
PRD_002409 C15 C15 C 0 1 N N N 16.502 -10.384 13.945 6.672   -4.199 4.396  MUB 2 C6     polymer 1 1 30  ? ? ? 
PRD_002409 C16 C16 C 0 1 N N N 11.910 -9.132  18.714 3.070   -4.973 -1.129 MUB 2 C7     polymer 1 1 31  ? ? ? 
PRD_002409 C17 C17 C 0 1 N N N 10.600 -8.481  19.037 2.382   -4.580 -2.410 MUB 2 C8     polymer 1 1 32  ? ? ? 
PRD_002409 C18 C18 C 0 1 N N R 14.357 -6.307  18.006 1.458   -2.523 1.756  MUB 2 C9     polymer 1 1 33  ? ? ? 
PRD_002409 C19 C19 C 0 1 N N N 13.546 -6.403  19.300 0.102   -3.072 1.395  MUB 2 C10    polymer 1 1 34  ? ? ? 
PRD_002409 C20 C20 C 0 1 N N N 15.385 -5.200  18.097 1.291   -1.336 2.707  MUB 2 C11    polymer 1 1 35  ? ? ? 
PRD_002409 O12 O12 O 0 1 N Y N 12.794 -9.563  14.907 5.929   -3.054 0.428  MUB 2 O1     polymer 1 1 36  ? ? ? 
PRD_002409 O13 O13 O 0 1 N N N 15.065 -7.525  17.740 2.229   -3.542 2.397  MUB 2 O3     polymer 1 1 37  ? ? ? 
PRD_002409 O14 O14 O 0 1 N N N 16.652 -7.801  15.312 4.092   -2.862 4.458  MUB 2 O4     polymer 1 1 38  ? ? ? 
PRD_002409 O15 O15 O 0 1 N N N 14.595 -10.817 15.279 6.198   -4.684 2.076  MUB 2 O5     polymer 1 1 39  ? ? ? 
PRD_002409 O16 O16 O 0 1 N N N 17.220 -11.279 14.772 8.075   -4.060 4.163  MUB 2 O6     polymer 1 1 40  ? ? ? 
PRD_002409 O17 O17 O 0 1 N N N 12.470 -9.894  19.496 3.363   -6.133 -0.929 MUB 2 O7     polymer 1 1 41  ? ? ? 
PRD_002409 O18 O18 O 0 1 N N N 12.431 -5.821  19.342 -0.211  -4.192 1.740  MUB 2 O10    polymer 1 1 42  ? ? ? 
PRD_002409 N3  N3  N 0 1 N N N 12.437 -8.829  17.526 3.361   -4.037 -0.204 MUB 2 N2     polymer 1 1 43  ? ? ? 
PRD_002409 N4  N4  N 0 1 N N N 14.164 -7.098  20.386 -0.764  -2.318 0.689  ALA 3 N      polymer 1 1 44  ? ? ? 
PRD_002409 C21 C21 C 0 1 N N S 13.451 -7.452  21.608 -2.082  -2.851 0.338  ALA 3 CA     polymer 1 1 45  ? ? ? 
PRD_002409 C22 C22 C 0 1 N N N 13.091 -6.219  22.440 -2.595  -2.152 -0.895 ALA 3 C      polymer 1 1 46  ? ? ? 
PRD_002409 O19 O19 O 0 1 N N N 12.092 -6.221  23.165 -1.925  -1.292 -1.428 ALA 3 O      polymer 1 1 47  ? ? ? 
PRD_002409 C23 C23 C 0 1 N N N 14.266 -8.442  22.439 -3.053  -2.617 1.497  ALA 3 CB     polymer 1 1 48  ? ? ? 
PRD_002409 N5  N5  N 0 1 N N N 13.898 -5.167  22.337 -3.798  -2.481 -1.406 FGA 4 N      polymer 1 1 49  ? ? ? 
PRD_002409 C24 C24 C 0 1 N N R 13.655 -3.973  23.126 -4.297  -1.801 -2.604 FGA 4 CA     polymer 1 1 50  ? ? ? 
PRD_002409 C25 C25 C 0 1 N N N 14.582 -3.963  24.312 -3.750  -2.483 -3.832 FGA 4 C      polymer 1 1 51  ? ? ? 
PRD_002409 O20 O20 O 0 1 N N N 15.666 -4.540  24.277 -3.019  -3.438 -3.718 FGA 4 O      polymer 1 1 52  ? ? ? 
PRD_002409 C26 C26 C 0 1 N N N 13.864 -2.725  22.273 -5.825  -1.861 -2.625 FGA 4 CB     polymer 1 1 53  ? ? ? 
PRD_002409 C27 C27 C 0 1 N N N 12.884 -2.651  21.104 -6.383  -1.063 -1.445 FGA 4 CG     polymer 1 1 54  ? ? ? 
PRD_002409 C28 C28 C 0 1 N N N 11.498 -2.200  21.527 -7.889  -1.121 -1.466 FGA 4 CD     polymer 1 1 55  ? ? ? 
PRD_002409 O21 O21 O 0 1 N N N 11.124 -2.268  22.689 -8.460  -1.740 -2.339 FGA 4 OE1    polymer 1 1 56  ? ? ? 
PRD_002409 O22 O22 O 0 1 N N N 14.225 -3.309  25.419 -4.075  -2.028 -5.052 FGA 4 OXT    polymer 1 1 57  ? ? ? 
PRD_002409 N6  N6  N 0 1 N N N 10.846 -2.192  20.254 -8.602  -0.486 -0.515 CYS 5 N      polymer 1 1 58  ? ? ? 
PRD_002409 C29 C29 C 0 1 N N R 9.480  -1.926  20.693 -10.065 -0.543 -0.535 CYS 5 CA     polymer 1 1 59  ? ? ? 
PRD_002409 C30 C30 C 0 1 N N N 8.507  -2.481  19.645 -10.625 0.662  0.176  CYS 5 C      polymer 1 1 60  ? ? ? 
PRD_002409 O23 O23 O 0 1 N N N 7.698  -1.751  19.075 -9.875  1.487  0.654  CYS 5 O      polymer 1 1 61  ? ? ? 
PRD_002409 C31 C31 C 0 1 N N N 9.290  -0.422  20.909 -10.536 -1.816 0.170  CYS 5 CB     polymer 1 1 62  ? ? ? 
PRD_002409 S1  S1  S 0 1 N N N 7.716  0.061   21.668 -9.863  -3.266 -0.687 CYS 5 SG     polymer 1 1 63  ? ? ? 
PRD_002409 N7  N7  N 0 1 N N N 8.606  -3.784  19.390 -11.959 0.823  0.282  DAL 6 N      polymer 1 1 64  ? ? ? 
PRD_002409 C32 C32 C 0 1 N N R 7.846  -4.422  18.319 -12.503 1.994  0.974  DAL 6 CA     polymer 1 1 65  ? ? ? 
PRD_002409 C33 C33 C 0 1 N N N 8.107  -5.921  18.300 -12.565 1.715  2.477  DAL 6 CB     polymer 1 1 66  ? ? ? 
PRD_002409 C34 C34 C 0 1 N N N 8.230  -3.804  16.982 -13.890 2.282  0.459  DAL 6 C      polymer 1 1 67  ? ? ? 
PRD_002409 O24 O24 O 0 1 N N N 9.423  -3.575  16.716 -14.376 1.579  -0.401 DAL 6 O      polymer 1 1 68  ? ? ? 
PRD_002409 N8  N8  N 0 1 N N N 7.225  -3.530  16.151 -14.590 3.322  0.955  DAL 7 N      polymer 1 1 69  ? ? ? 
PRD_002409 C35 C35 C 0 1 N N R 7.442  -2.864  14.860 -15.938 3.602  0.454  DAL 7 CA     polymer 1 1 70  ? ? ? 
PRD_002409 C36 C36 C 0 1 N N N 6.122  -2.610  14.159 -15.845 4.457  -0.811 DAL 7 CB     polymer 1 1 71  ? ? ? 
PRD_002409 C37 C37 C 0 1 N N N 8.374  -3.664  13.945 -16.720 4.345  1.506  DAL 7 C      polymer 1 1 72  ? ? ? 
PRD_002409 O25 O25 O 0 1 N N N 9.222  -3.085  13.255 -16.204 4.614  2.566  DAL 7 O      polymer 1 1 73  ? ? ? 
PRD_002409 O26 O26 O 0 1 N Y N 8.291  -4.891  13.880 -17.989 4.710  1.267  DAL 7 OXT    polymer 1 1 74  ? ? ? 
PRD_002409 H1  H1  H 0 1 N N N 4.893  -17.109 20.289 6.653   8.369  2.252  UDP 1 HN3    polymer 1 1 75  ? ? ? 
PRD_002409 H2  H2  H 0 1 N N N 8.000  -17.751 17.554 9.925   5.901  3.019  UDP 1 H5     polymer 1 1 76  ? ? ? 
PRD_002409 H3  H3  H 0 1 N N N 8.518  -15.404 17.718 9.608   4.890  0.822  UDP 1 H6     polymer 1 1 77  ? ? ? 
PRD_002409 H4  H4  H 0 1 N N N 6.683  -13.058 19.971 6.808   5.853  -1.414 UDP 1 "H1'"  polymer 1 1 78  ? ? ? 
PRD_002409 H5  H5  H 0 1 N N N 9.434  -13.939 18.959 9.876   5.786  -1.329 UDP 1 "H2'"  polymer 1 1 79  ? ? ? 
PRD_002409 H6  H6  H 0 0 N N N 9.895  -13.404 21.187 9.500   7.291  -3.145 UDP 1 "HO2'" polymer 1 1 80  ? ? ? 
PRD_002409 H7  H7  H 0 1 N N N 9.957  -11.635 18.830 9.881   4.263  -3.118 UDP 1 "H3'"  polymer 1 1 81  ? ? ? 
PRD_002409 H8  H8  H 0 1 N N N 7.251  -10.859 18.268 7.137   3.349  -2.720 UDP 1 "H4'"  polymer 1 1 82  ? ? ? 
PRD_002409 H9  H9  H 0 0 N N N 8.645  -10.065 19.954 8.662   5.757  -4.567 UDP 1 "HO3'" polymer 1 1 83  ? ? ? 
PRD_002409 H10 H10 H 0 0 N N N 9.311  -12.170 16.454 9.223   1.956  -3.028 UDP 1 "H5'1" polymer 1 1 84  ? ? ? 
PRD_002409 H11 H11 H 0 0 N N N 7.763  -11.447 15.899 9.742   2.451  -1.399 UDP 1 "H5'2" polymer 1 1 85  ? ? ? 
PRD_002409 H12 H12 H 0 0 N N N 9.881  -7.328  15.352 9.484   0.162  0.776  UDP 1 HOA2   polymer 1 1 86  ? ? ? 
PRD_002409 H13 H13 H 0 0 N N N 12.038 -11.237 12.205 6.182   -3.079 -2.423 UDP 1 HOB3   polymer 1 1 87  ? ? ? 
PRD_002409 H14 H14 H 0 1 N N N 12.770 -11.150 16.236 5.840   -5.089 0.082  MUB 2 H1     polymer 1 1 88  ? ? ? 
PRD_002409 H15 H15 H 0 1 N N N 14.184 -9.933  17.859 3.734   -5.431 1.319  MUB 2 H2     polymer 1 1 89  ? ? ? 
PRD_002409 H16 H16 H 0 1 N N N 11.939 -8.196  16.933 3.127   -3.109 -0.364 MUB 2 HN2    polymer 1 1 90  ? ? ? 
PRD_002409 H17 H17 H 0 1 N N N 10.269 -8.799  20.037 2.231   -5.465 -3.028 MUB 2 H81    polymer 1 1 91  ? ? ? 
PRD_002409 H18 H18 H 0 1 N N N 10.720 -7.388  19.021 1.417   -4.129 -2.180 MUB 2 H82    polymer 1 1 92  ? ? ? 
PRD_002409 H19 H19 H 0 1 N N N 9.849  -8.778  18.290 3.000   -3.861 -2.949 MUB 2 H83    polymer 1 1 93  ? ? ? 
PRD_002409 H20 H20 H 0 1 N N N 14.097 -7.599  15.899 3.885   -2.428 1.857  MUB 2 H3     polymer 1 1 94  ? ? ? 
PRD_002409 H21 H21 H 0 1 N N N 13.669 -6.085  17.177 1.970   -2.195 0.852  MUB 2 H9     polymer 1 1 95  ? ? ? 
PRD_002409 H22 H22 H 0 0 N N N 15.955 -5.150  17.157 0.853   -1.680 3.644  MUB 2 H111   polymer 1 1 96  ? ? ? 
PRD_002409 H23 H23 H 0 0 N N N 14.876 -4.240  18.269 2.265   -0.889 2.904  MUB 2 H112   polymer 1 1 97  ? ? ? 
PRD_002409 H24 H24 H 0 0 N N N 16.072 -5.405  18.932 0.636   -0.594 2.250  MUB 2 H113   polymer 1 1 98  ? ? ? 
PRD_002409 H25 H25 H 0 1 N N N 16.435 -9.445  16.568 4.110   -4.807 3.758  MUB 2 H4     polymer 1 1 99  ? ? ? 
PRD_002409 H26 H26 H 0 1 N N N 14.761 -9.149  14.030 6.197   -2.770 2.855  MUB 2 H5     polymer 1 1 100 ? ? ? 
PRD_002409 H27 H27 H 0 1 N N N 16.085 -10.936 13.090 6.378   -3.565 5.232  MUB 2 H61    polymer 1 1 101 ? ? ? 
PRD_002409 H28 H28 H 0 1 N N N 17.183 -9.602  13.580 6.443   -5.239 4.631  MUB 2 H62    polymer 1 1 102 ? ? ? 
PRD_002409 H29 H29 H 0 1 N Y N 17.924 -11.676 14.273 8.625   -4.310 4.918  MUB 2 HO6    polymer 1 1 103 ? ? ? 
PRD_002409 H30 H30 H 0 1 N Y N 17.398 -8.180  14.861 4.543   -3.031 5.296  MUB 2 HO4    polymer 1 1 104 ? ? ? 
PRD_002409 H31 H31 H 0 1 N N N 15.128 -7.353  20.304 -0.514  -1.422 0.413  ALA 3 H      polymer 1 1 105 ? ? ? 
PRD_002409 H32 H32 H 0 1 N N N 12.510 -7.949  21.329 -2.001  -3.920 0.141  ALA 3 HA     polymer 1 1 106 ? ? ? 
PRD_002409 H33 H33 H 0 1 N N N 13.712 -8.696  23.355 -4.034  -3.014 1.236  ALA 3 HB1    polymer 1 1 107 ? ? ? 
PRD_002409 H34 H34 H 0 1 N N N 14.442 -9.355  21.852 -2.682  -3.123 2.389  ALA 3 HB2    polymer 1 1 108 ? ? ? 
PRD_002409 H35 H35 H 0 1 N N N 15.231 -7.987  22.708 -3.134  -1.548 1.693  ALA 3 HB3    polymer 1 1 109 ? ? ? 
PRD_002409 H36 H36 H 0 1 N N N 14.678 -5.199  21.712 -4.334  -3.168 -0.980 FGA 4 H      polymer 1 1 110 ? ? ? 
PRD_002409 H37 H37 H 0 1 N N N 12.617 -3.978  23.489 -3.974  -0.760 -2.592 FGA 4 HA     polymer 1 1 111 ? ? ? 
PRD_002409 H38 H38 H 0 1 N N N 13.727 -1.836  22.907 -6.193  -1.434 -3.559 FGA 4 HB2    polymer 1 1 112 ? ? ? 
PRD_002409 H39 H39 H 0 1 N N N 14.889 -2.736  21.875 -6.150  -2.898 -2.548 FGA 4 HB3    polymer 1 1 113 ? ? ? 
PRD_002409 H40 H40 H 0 1 N N N 13.274 -1.939  20.362 -6.016  -1.489 -0.512 FGA 4 HG2    polymer 1 1 114 ? ? ? 
PRD_002409 H41 H41 H 0 1 N N N 12.805 -3.649  20.648 -6.059  -0.025 -1.523 FGA 4 HG3    polymer 1 1 115 ? ? ? 
PRD_002409 H42 H42 H 0 1 N N N 14.912 -3.389  26.070 -3.700  -2.497 -5.810 FGA 4 HXT    polymer 1 1 116 ? ? ? 
PRD_002409 H43 H43 H 0 1 N N N 11.217 -2.328  19.335 -8.145  0.010  0.183  CYS 5 H      polymer 1 1 117 ? ? ? 
PRD_002409 H44 H44 H 0 1 N N N 9.295  -2.441  21.647 -10.414 -0.549 -1.568 CYS 5 HA     polymer 1 1 118 ? ? ? 
PRD_002409 H45 H45 H 0 1 N N N 10.103 -0.067  21.559 -10.187 -1.809 1.203  CYS 5 HB2    polymer 1 1 119 ? ? ? 
PRD_002409 H46 H46 H 0 1 N N N 9.361  0.073   19.929 -11.625 -1.858 0.155  CYS 5 HB3    polymer 1 1 120 ? ? ? 
PRD_002409 H47 H47 H 0 1 N N N 7.830  1.355   21.727 -10.350 -4.294 0.030  CYS 5 HG     polymer 1 1 121 ? ? ? 
PRD_002409 H48 H48 H 0 1 N N N 9.219  -4.342  19.949 -12.559 0.163  -0.100 DAL 6 H      polymer 1 1 122 ? ? ? 
PRD_002409 H49 H49 H 0 1 N N N 6.771  -4.256  18.485 -11.861 2.855  0.790  DAL 6 HA     polymer 1 1 123 ? ? ? 
PRD_002409 H50 H50 H 0 1 N N N 7.527  -6.384  17.488 -11.562 1.507  2.849  DAL 6 HB1    polymer 1 1 124 ? ? ? 
PRD_002409 H51 H51 H 0 1 N N N 9.179  -6.104  18.136 -12.970 2.587  2.992  DAL 6 HB2    polymer 1 1 125 ? ? ? 
PRD_002409 H52 H52 H 0 1 N N N 7.804  -6.358  19.263 -13.207 0.854  2.661  DAL 6 HB3    polymer 1 1 126 ? ? ? 
PRD_002409 H53 H53 H 0 1 N N N 6.295  -3.786  16.414 -14.201 3.885  1.643  DAL 7 H      polymer 1 1 127 ? ? ? 
PRD_002409 H54 H54 H 0 1 N N N 7.916  -1.889  15.048 -16.442 2.664  0.222  DAL 7 HA     polymer 1 1 128 ? ? ? 
PRD_002409 H55 H55 H 0 1 N N N 6.308  -2.112  13.196 -16.848 4.666  -1.183 DAL 7 HB1    polymer 1 1 129 ? ? ? 
PRD_002409 H56 H56 H 0 1 N N N 5.610  -3.568  13.983 -15.341 5.396  -0.579 DAL 7 HB2    polymer 1 1 130 ? ? ? 
PRD_002409 H57 H57 H 0 1 N N N 5.490  -1.967  14.789 -15.279 3.920  -1.572 DAL 7 HB3    polymer 1 1 131 ? ? ? 
PRD_002409 H58 H58 H 0 1 N Y N 8.937  -5.221  13.267 -18.450 5.185  1.972  DAL 7 HXT    polymer 1 1 132 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002409 N1  C1  SING N N 1   
PRD_002409 N1  C4  SING N N 2   
PRD_002409 N1  C5  SING N N 3   
PRD_002409 C1  N2  SING N N 4   
PRD_002409 C1  O1  DOUB N N 5   
PRD_002409 N2  C2  SING N N 6   
PRD_002409 N2  H1  SING N N 7   
PRD_002409 C2  C3  SING N N 8   
PRD_002409 C2  O2  DOUB N N 9   
PRD_002409 C3  C4  DOUB N N 10  
PRD_002409 C3  H2  SING N N 11  
PRD_002409 C4  H3  SING N N 12  
PRD_002409 C5  C6  SING N N 13  
PRD_002409 C5  O4  SING N N 14  
PRD_002409 C5  H4  SING N N 15  
PRD_002409 C6  O3  SING N N 16  
PRD_002409 C6  C7  SING N N 17  
PRD_002409 C6  H5  SING N N 18  
PRD_002409 O3  H6  SING N N 19  
PRD_002409 C7  C8  SING N N 20  
PRD_002409 C7  O5  SING N N 21  
PRD_002409 C7  H7  SING N N 22  
PRD_002409 C8  O4  SING N N 23  
PRD_002409 C8  C9  SING N N 24  
PRD_002409 C8  H8  SING N N 25  
PRD_002409 O5  H9  SING N N 26  
PRD_002409 C9  O6  SING N N 27  
PRD_002409 C9  H10 SING N N 28  
PRD_002409 C9  H11 SING N N 29  
PRD_002409 O6  P1  SING N N 30  
PRD_002409 P1  O7  DOUB N N 31  
PRD_002409 P1  O8  SING N N 32  
PRD_002409 P1  O9  SING N N 33  
PRD_002409 O8  H12 SING N N 34  
PRD_002409 O9  P2  SING N N 35  
PRD_002409 P2  O10 DOUB N N 36  
PRD_002409 P2  O11 SING N N 37  
PRD_002409 O11 H13 SING N N 38  
PRD_002409 C10 C11 SING N N 39  
PRD_002409 C11 C12 SING N N 40  
PRD_002409 C12 C13 SING N N 41  
PRD_002409 C13 C14 SING N N 42  
PRD_002409 C14 C15 SING N N 43  
PRD_002409 C16 C17 SING N N 44  
PRD_002409 C18 C19 SING N N 45  
PRD_002409 C18 C20 SING N N 46  
PRD_002409 C10 O12 SING N N 47  
PRD_002409 C12 O13 SING N N 48  
PRD_002409 C18 O13 SING N N 49  
PRD_002409 C13 O14 SING N N 50  
PRD_002409 C10 O15 SING N N 51  
PRD_002409 C14 O15 SING N N 52  
PRD_002409 C15 O16 SING N N 53  
PRD_002409 C16 O17 DOUB N N 54  
PRD_002409 C19 O18 DOUB N N 55  
PRD_002409 C11 N3  SING N N 56  
PRD_002409 C16 N3  SING N N 57  
PRD_002409 C10 H14 SING N N 58  
PRD_002409 C11 H15 SING N N 59  
PRD_002409 N3  H16 SING N N 60  
PRD_002409 C17 H17 SING N N 61  
PRD_002409 C17 H18 SING N N 62  
PRD_002409 C17 H19 SING N N 63  
PRD_002409 C12 H20 SING N N 64  
PRD_002409 C18 H21 SING N N 65  
PRD_002409 C20 H22 SING N N 66  
PRD_002409 C20 H23 SING N N 67  
PRD_002409 C20 H24 SING N N 68  
PRD_002409 C13 H25 SING N N 69  
PRD_002409 C14 H26 SING N N 70  
PRD_002409 C15 H27 SING N N 71  
PRD_002409 C15 H28 SING N N 72  
PRD_002409 O16 H29 SING N N 73  
PRD_002409 O14 H30 SING N N 74  
PRD_002409 N4  C21 SING N N 75  
PRD_002409 N4  H31 SING N N 76  
PRD_002409 C21 C22 SING N N 77  
PRD_002409 C21 C23 SING N N 78  
PRD_002409 C21 H32 SING N N 79  
PRD_002409 C22 O19 DOUB N N 80  
PRD_002409 C23 H33 SING N N 81  
PRD_002409 C23 H34 SING N N 82  
PRD_002409 C23 H35 SING N N 83  
PRD_002409 N5  C24 SING N N 84  
PRD_002409 N5  H36 SING N N 85  
PRD_002409 C24 C25 SING N N 86  
PRD_002409 C24 C26 SING N N 87  
PRD_002409 C24 H37 SING N N 88  
PRD_002409 C25 O20 DOUB N N 89  
PRD_002409 C25 O22 SING N N 90  
PRD_002409 C26 C27 SING N N 91  
PRD_002409 C26 H38 SING N N 92  
PRD_002409 C26 H39 SING N N 93  
PRD_002409 C27 C28 SING N N 94  
PRD_002409 C27 H40 SING N N 95  
PRD_002409 C27 H41 SING N N 96  
PRD_002409 C28 O21 DOUB N N 97  
PRD_002409 O22 H42 SING N N 98  
PRD_002409 N6  C29 SING N N 99  
PRD_002409 N6  H43 SING N N 100 
PRD_002409 C29 C30 SING N N 101 
PRD_002409 C29 C31 SING N N 102 
PRD_002409 C29 H44 SING N N 103 
PRD_002409 C30 O23 DOUB N N 104 
PRD_002409 C31 S1  SING N N 105 
PRD_002409 C31 H45 SING N N 106 
PRD_002409 C31 H46 SING N N 107 
PRD_002409 S1  H47 SING N N 108 
PRD_002409 N7  C32 SING N N 109 
PRD_002409 N7  H48 SING N N 110 
PRD_002409 C32 C33 SING N N 111 
PRD_002409 C32 C34 SING N N 112 
PRD_002409 C32 H49 SING N N 113 
PRD_002409 C33 H50 SING N N 114 
PRD_002409 C33 H51 SING N N 115 
PRD_002409 C33 H52 SING N N 116 
PRD_002409 C34 O24 DOUB N N 117 
PRD_002409 N8  C35 SING N N 118 
PRD_002409 N8  H53 SING N N 119 
PRD_002409 C35 C36 SING N N 120 
PRD_002409 C35 C37 SING N N 121 
PRD_002409 C35 H54 SING N N 122 
PRD_002409 C36 H55 SING N N 123 
PRD_002409 C36 H56 SING N N 124 
PRD_002409 C36 H57 SING N N 125 
PRD_002409 C37 O25 DOUB N N 126 
PRD_002409 C37 O26 SING N N 127 
PRD_002409 O26 H58 SING N N 128 
PRD_002409 P2  O12 SING N N 129 
PRD_002409 C19 N4  SING N N 130 
PRD_002409 C22 N5  SING N N 131 
PRD_002409 C28 N6  SING N N 132 
PRD_002409 C30 N7  SING N N 133 
PRD_002409 C34 N8  SING N N 134 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002409 InChI            InChI                1.06  "InChI=1S/C37H58N8O26P2S/c1-13(29(53)40-15(3)34(57)58)39-32(56)19(12-74)42-22(48)7-6-18(35(59)60)43-30(54)14(2)38-31(55)16(4)67-28-24(41-17(5)47)36(69-20(10-46)26(28)51)70-73(64,65)71-72(62,63)66-11-21-25(50)27(52)33(68-21)45-9-8-23(49)44-37(45)61/h8-9,13-16,18-21,24-28,33,36,46,50-52,74H,6-7,10-12H2,1-5H3,(H,38,55)(H,39,56)(H,40,53)(H,41,47)(H,42,48)(H,43,54)(H,57,58)(H,59,60)(H,62,63)(H,64,65)(H,44,49,61)/t13-,14+,15-,16-,18-,19+,20-,21-,24-,25-,26-,27-,28-,33-,36-/m1/s1" 
PRD_002409 InChIKey         InChI                1.06  BOZDMWYKWGACGD-JJDDAUBASA-N                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
PRD_002409 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CS)NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1NC(C)=O)C(O)=O)C(O)=O"                                                                                                                                                                                                                                                                         
PRD_002409 SMILES           CACTVS               3.385 "C[CH](NC(=O)[CH](C)NC(=O)[CH](CS)NC(=O)CC[CH](NC(=O)[CH](C)NC(=O)[CH](C)O[CH]1[CH](O)[CH](CO)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)C(O)=O)C(O)=O"                                                                                                                                                                                                                                                                                               
PRD_002409 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)N[C@H](CCC(=O)N[C@@H](CS)C(=O)N[C@H](C)C(=O)N[C@H](C)C(=O)O)C(=O)O)NC(=O)[C@@H](C)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C"                                                                                                                                                                                                                                                                           
PRD_002409 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NC(CCC(=O)NC(CS)C(=O)NC(C)C(=O)NC(C)C(=O)O)C(=O)O)NC(=O)C(C)OC1C(C(OC(C1O)CO)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C"                                                                                                                                                                                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002409 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[[(2~{S})-2-[[(2~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-oxidanyl-oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]-5-oxidanylidene-5-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]propan-2-yl]amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid" 
# 
