data_PRDCC_000616
# 
_chem_comp.id                                    PRD_000616 
_chem_comp.name                                  3-cyclohexyl-D-alanyl-L-prolyl-N~2~-methyl-L-arginine 
_chem_comp.formula                               "C21 H38 N6 O4" 
_chem_comp.formula_weight                        438.564 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000616 C1  C1  C 0 1 N N N 8.899  -14.036 11.175 5.316  -1.193 -0.139 ZAL 1 C1   polymer 1 1 1  ? ? ? 
PRD_000616 C2  C2  C 0 1 N N N 7.801  -15.080 11.589 6.215  -1.788 0.946  ZAL 1 C2   polymer 1 1 2  ? ? ? 
PRD_000616 C3  C3  C 0 1 N N N 6.403  -14.393 11.750 7.635  -1.951 0.399  ZAL 1 C3   polymer 1 1 3  ? ? ? 
PRD_000616 C4  C4  C 0 1 N N N 6.059  -13.339 10.635 8.179  -0.584 -0.022 ZAL 1 C4   polymer 1 1 4  ? ? ? 
PRD_000616 C5  C5  C 0 1 N N N 7.014  -13.405 9.399  7.280  0.011  -1.107 ZAL 1 C5   polymer 1 1 5  ? ? ? 
PRD_000616 C6  C6  C 0 1 N N N 8.532  -13.388 9.789  5.860  0.174  -0.560 ZAL 1 C6   polymer 1 1 6  ? ? ? 
PRD_000616 N1  N1  N 0 1 N N N 12.210 -15.763 12.364 2.872  -1.594 -1.744 ZAL 1 N    polymer 1 1 7  ? ? ? 
PRD_000616 C7  C7  C 0 1 N N R 10.902 -15.071 12.493 2.970  -0.552 -0.712 ZAL 1 CA   polymer 1 1 8  ? ? ? 
PRD_000616 C8  C8  C 0 1 N N N 10.304 -14.731 11.091 3.896  -1.030 0.408  ZAL 1 CB   polymer 1 1 9  ? ? ? 
PRD_000616 C9  C9  C 0 1 N N N 11.154 -13.810 13.313 1.601  -0.274 -0.148 ZAL 1 C    polymer 1 1 10 ? ? ? 
PRD_000616 O1  O1  O 0 1 N N N 12.128 -13.117 12.926 0.715  -1.093 -0.275 ZAL 1 O    polymer 1 1 11 ? ? ? 
PRD_000616 N2  N2  N 0 1 N N N 10.405 -13.424 14.420 1.361  0.884  0.499  PRO 2 N    polymer 1 1 12 ? ? ? 
PRD_000616 C10 C10 C 0 1 N N S 10.769 -12.211 15.162 0.078  1.282  1.096  PRO 2 CA   polymer 1 1 13 ? ? ? 
PRD_000616 C11 C11 C 0 1 N N N 12.182 -12.401 15.756 -0.991 1.321  0.034  PRO 2 C    polymer 1 1 14 ? ? ? 
PRD_000616 O2  O2  O 0 1 N N N 12.410 -13.547 16.155 -0.716 1.045  -1.114 PRO 2 O    polymer 1 1 15 ? ? ? 
PRD_000616 C12 C12 C 0 1 N N N 9.705  -12.146 16.277 0.270  2.689  1.699  PRO 2 CB   polymer 1 1 16 ? ? ? 
PRD_000616 C13 C13 C 0 1 N N N 8.563  -13.044 15.761 1.489  3.240  0.914  PRO 2 CG   polymer 1 1 17 ? ? ? 
PRD_000616 C14 C14 C 0 1 N N N 9.263  -14.158 14.938 2.343  1.959  0.729  PRO 2 CD   polymer 1 1 18 ? ? ? 
PRD_000616 N3  N3  N 0 1 N N N 13.133 -11.401 15.837 -2.253 1.664  0.361  MMO 3 N    polymer 1 1 19 ? ? ? 
PRD_000616 C15 C15 C 0 1 N N S 14.461 -11.725 16.444 -3.292 1.702  -0.671 MMO 3 CA   polymer 1 1 20 ? ? ? 
PRD_000616 C16 C16 C 0 1 N N N 14.731 -10.762 17.610 -3.862 3.095  -0.758 MMO 3 C    polymer 1 1 21 ? ? ? 
PRD_000616 O3  O3  O 0 1 N N N 15.622 -9.910  17.535 -3.443 3.966  -0.033 MMO 3 O    polymer 1 1 22 ? ? ? 
PRD_000616 C17 C17 C 0 1 N N N 15.600 -11.697 15.361 -4.406 0.717  -0.310 MMO 3 CB   polymer 1 1 23 ? ? ? 
PRD_000616 C18 C18 C 0 1 N N N 15.302 -12.698 14.211 -3.855 -0.710 -0.343 MMO 3 CG   polymer 1 1 24 ? ? ? 
PRD_000616 C19 C19 C 0 1 N N N 16.434 -12.730 13.160 -4.969 -1.695 0.018  MMO 3 CD   polymer 1 1 25 ? ? ? 
PRD_000616 N4  N4  N 0 1 N N N 16.663 -11.409 12.544 -4.441 -3.061 -0.014 MMO 3 NE   polymer 1 1 26 ? ? ? 
PRD_000616 C20 C20 C 0 1 N N N 17.663 -11.179 11.711 -5.265 -4.123 0.278  MMO 3 CZ   polymer 1 1 27 ? ? ? 
PRD_000616 N5  N5  N 0 1 N N N 18.536 -12.110 11.361 -4.769 -5.405 0.248  MMO 3 NH2  polymer 1 1 28 ? ? ? 
PRD_000616 N6  N6  N 0 1 N N N 17.800 -9.951  11.183 -6.514 -3.914 0.583  MMO 3 NH1  polymer 1 1 29 ? ? ? 
PRD_000616 C21 C21 C 0 1 N N N 12.809 -10.043 15.332 -2.586 1.998  1.748  MMO 3 CN   polymer 1 1 30 ? ? ? 
PRD_000616 O4  O4  O 0 1 N Y N ?      ?       ?      -4.835 3.368  -1.642 MMO 3 OXT  polymer 1 1 31 ? ? ? 
PRD_000616 H1  H1  H 0 1 N N N 8.940  -13.243 11.937 5.299  -1.858 -1.002 ZAL 1 H1   polymer 1 1 32 ? ? ? 
PRD_000616 H2  H2  H 0 1 N N N 7.733  -15.856 10.813 6.233  -1.122 1.809  ZAL 1 H2B  polymer 1 1 33 ? ? ? 
PRD_000616 H3  H3  H 0 1 N N N 8.087  -15.542 12.546 5.828  -2.761 1.246  ZAL 1 H2A  polymer 1 1 34 ? ? ? 
PRD_000616 H4  H4  H 0 1 N N N 5.631  -15.177 11.731 8.276  -2.375 1.172  ZAL 1 H3   polymer 1 1 35 ? ? ? 
PRD_000616 H5  H5  H 0 1 N N N 6.382  -13.882 12.724 7.618  -2.616 -0.464 ZAL 1 H3A  polymer 1 1 36 ? ? ? 
PRD_000616 H6  H6  H 0 1 N N N 5.030  -13.520 10.290 8.197  0.082  0.841  ZAL 1 H4   polymer 1 1 37 ? ? ? 
PRD_000616 H7  H7  H 0 1 N N N 6.127  -12.333 11.074 9.191  -0.700 -0.411 ZAL 1 H4A  polymer 1 1 38 ? ? ? 
PRD_000616 H8  H8  H 0 1 N N N 6.806  -14.333 8.846  7.668  0.985  -1.407 ZAL 1 H5   polymer 1 1 39 ? ? ? 
PRD_000616 H9  H9  H 0 1 N N N 6.810  -12.539 8.753  7.263  -0.655 -1.970 ZAL 1 H5A  polymer 1 1 40 ? ? ? 
PRD_000616 H10 H10 H 0 1 N N N 8.861  -12.339 9.811  5.220  0.598  -1.333 ZAL 1 H6   polymer 1 1 41 ? ? ? 
PRD_000616 H11 H11 H 0 1 N N N 9.086  -13.930 9.008  5.878  0.840  0.303  ZAL 1 H6A  polymer 1 1 42 ? ? ? 
PRD_000616 H12 H12 H 0 1 N N N 12.570 -15.969 13.274 2.500  -2.450 -1.360 ZAL 1 H    polymer 1 1 43 ? ? ? 
PRD_000616 H13 H13 H 0 1 N Y N 12.088 -16.614 11.854 2.317  -1.278 -2.525 ZAL 1 H2   polymer 1 1 44 ? ? ? 
PRD_000616 H14 H14 H 0 1 N N N 10.193 -15.716 13.032 3.373  0.359  -1.154 ZAL 1 HA   polymer 1 1 45 ? ? ? 
PRD_000616 H15 H15 H 0 1 N N N 10.199 -15.665 10.519 3.542  -1.987 0.789  ZAL 1 HB   polymer 1 1 46 ? ? ? 
PRD_000616 H16 H16 H 0 1 N N N 10.998 -14.056 10.568 3.899  -0.296 1.214  ZAL 1 HBA  polymer 1 1 47 ? ? ? 
PRD_000616 H17 H17 H 0 1 N N N 10.728 -11.313 14.528 -0.202 0.576  1.878  PRO 2 HA   polymer 1 1 48 ? ? ? 
PRD_000616 H18 H18 H 0 1 N N N 10.108 -12.533 17.224 -0.611 3.307  1.526  PRO 2 HB2  polymer 1 1 49 ? ? ? 
PRD_000616 H19 H19 H 0 1 N N N 9.354  -11.114 16.422 0.495  2.625  2.764  PRO 2 HB3  polymer 1 1 50 ? ? ? 
PRD_000616 H20 H20 H 0 1 N N N 8.004  -13.479 16.603 1.181  3.651  -0.048 PRO 2 HG2  polymer 1 1 51 ? ? ? 
PRD_000616 H21 H21 H 0 1 N N N 7.876  -12.467 15.124 2.027  3.985  1.500  PRO 2 HG3  polymer 1 1 52 ? ? ? 
PRD_000616 H22 H22 H 0 1 N N N 8.618  -14.531 14.128 2.924  1.755  1.628  PRO 2 HD2  polymer 1 1 53 ? ? ? 
PRD_000616 H23 H23 H 0 1 N N N 9.575  -14.999 15.575 3.001  2.062  -0.133 PRO 2 HD3  polymer 1 1 54 ? ? ? 
PRD_000616 H24 H24 H 0 1 N N N 14.417 -12.746 16.851 -2.860 1.426  -1.632 MMO 3 HA   polymer 1 1 55 ? ? ? 
PRD_000616 H25 H25 H 0 0 N N N 15.674 -10.682 14.944 -4.778 0.940  0.690  MMO 3 HCB1 polymer 1 1 56 ? ? ? 
PRD_000616 H26 H26 H 0 0 N N N 16.554 -11.969 15.836 -5.220 0.809  -1.029 MMO 3 HCB2 polymer 1 1 57 ? ? ? 
PRD_000616 H27 H27 H 0 0 N N N 15.186 -13.705 14.638 -3.483 -0.932 -1.343 MMO 3 HCG1 polymer 1 1 58 ? ? ? 
PRD_000616 H28 H28 H 0 0 N N N 14.366 -12.400 13.715 -3.041 -0.802 0.376  MMO 3 HCG2 polymer 1 1 59 ? ? ? 
PRD_000616 H29 H29 H 0 0 N N N 17.363 -13.058 13.650 -5.341 -1.472 1.018  MMO 3 HCD1 polymer 1 1 60 ? ? ? 
PRD_000616 H30 H30 H 0 0 N N N 16.164 -13.447 12.370 -5.782 -1.603 -0.701 MMO 3 HCD2 polymer 1 1 61 ? ? ? 
PRD_000616 H31 H31 H 0 0 N N N 19.272 -11.890 10.720 -3.839 -5.561 0.021  MMO 3 HH21 polymer 1 1 62 ? ? ? 
PRD_000616 H32 H32 H 0 0 N N N 18.460 -13.033 11.737 -5.350 -6.154 0.454  MMO 3 HH22 polymer 1 1 63 ? ? ? 
PRD_000616 H33 H33 H 0 0 N N N 18.582 -9.895  10.563 -7.095 -4.663 0.789  MMO 3 HH11 polymer 1 1 64 ? ? ? 
PRD_000616 H34 H34 H 0 1 N N N 11.785 -10.035 14.931 -2.448 3.068  1.907  MMO 3 HC1  polymer 1 1 65 ? ? ? 
PRD_000616 H35 H35 H 0 1 N N N 12.886 -9.318  16.155 -3.624 1.732  1.947  MMO 3 HC2  polymer 1 1 66 ? ? ? 
PRD_000616 H36 H36 H 0 1 N N N 13.516 -9.770  14.535 -1.933 1.444  2.422  MMO 3 HC3  polymer 1 1 67 ? ? ? 
PRD_000616 H37 H37 H 0 1 N Y N ?      ?       ?      -5.169 4.275  -1.661 MMO 3 HXT  polymer 1 1 68 ? ? ? 
PRD_000616 H38 H38 H 0 1 N N N 16.038 -10.660 12.765 -3.511 -3.217 -0.241 MMO 3 HE   polymer 1 1 69 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000616 C1  C2  SING N N 1  
PRD_000616 C1  C6  SING N N 2  
PRD_000616 C1  C8  SING N N 3  
PRD_000616 C1  H1  SING N N 4  
PRD_000616 C2  C3  SING N N 5  
PRD_000616 C2  H2  SING N N 6  
PRD_000616 C2  H3  SING N N 7  
PRD_000616 C3  C4  SING N N 8  
PRD_000616 C3  H4  SING N N 9  
PRD_000616 C3  H5  SING N N 10 
PRD_000616 C4  C5  SING N N 11 
PRD_000616 C4  H6  SING N N 12 
PRD_000616 C4  H7  SING N N 13 
PRD_000616 C5  C6  SING N N 14 
PRD_000616 C5  H8  SING N N 15 
PRD_000616 C5  H9  SING N N 16 
PRD_000616 C6  H10 SING N N 17 
PRD_000616 C6  H11 SING N N 18 
PRD_000616 N1  C7  SING N N 19 
PRD_000616 N1  H12 SING N N 20 
PRD_000616 N1  H13 SING N N 21 
PRD_000616 C7  C8  SING N N 22 
PRD_000616 C7  C9  SING N N 23 
PRD_000616 C7  H14 SING N N 24 
PRD_000616 C8  H15 SING N N 25 
PRD_000616 C8  H16 SING N N 26 
PRD_000616 C9  O1  DOUB N N 27 
PRD_000616 N2  C10 SING N N 28 
PRD_000616 N2  C14 SING N N 29 
PRD_000616 C10 C11 SING N N 30 
PRD_000616 C10 C12 SING N N 31 
PRD_000616 C10 H17 SING N N 32 
PRD_000616 C11 O2  DOUB N N 33 
PRD_000616 C12 C13 SING N N 34 
PRD_000616 C12 H18 SING N N 35 
PRD_000616 C12 H19 SING N N 36 
PRD_000616 C13 C14 SING N N 37 
PRD_000616 C13 H20 SING N N 38 
PRD_000616 C13 H21 SING N N 39 
PRD_000616 C14 H22 SING N N 40 
PRD_000616 C14 H23 SING N N 41 
PRD_000616 N3  C15 SING N N 42 
PRD_000616 N3  C21 SING N N 43 
PRD_000616 C15 C16 SING N N 44 
PRD_000616 C15 C17 SING N N 45 
PRD_000616 C15 H24 SING N N 46 
PRD_000616 C16 O3  DOUB N N 47 
PRD_000616 C17 C18 SING N N 48 
PRD_000616 C17 H25 SING N N 49 
PRD_000616 C17 H26 SING N N 50 
PRD_000616 C18 C19 SING N N 51 
PRD_000616 C18 H27 SING N N 52 
PRD_000616 C18 H28 SING N N 53 
PRD_000616 C19 N4  SING N N 54 
PRD_000616 C19 H29 SING N N 55 
PRD_000616 C19 H30 SING N N 56 
PRD_000616 N4  C20 SING N N 57 
PRD_000616 C20 N5  SING N N 58 
PRD_000616 C20 N6  DOUB N N 59 
PRD_000616 N5  H31 SING N N 60 
PRD_000616 N5  H32 SING N N 61 
PRD_000616 N6  H33 SING N N 62 
PRD_000616 C21 H34 SING N N 63 
PRD_000616 C21 H35 SING N N 64 
PRD_000616 C21 H36 SING N N 65 
PRD_000616 C16 O4  SING N N 66 
PRD_000616 O4  H37 SING N N 67 
PRD_000616 N4  H38 SING N N 68 
PRD_000616 C9  N2  SING N N 69 
PRD_000616 C11 N3  SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000616 SMILES           ACDLabs              12.01 "O=C(N(C(C(=O)O)CCCNC(=[N@H])N)C)C2N(C(=O)C(N)CC1CCCCC1)CCC2"                                                                                                                    
PRD_000616 InChI            InChI                1.03  "InChI=1S/C21H38N6O4/c1-26(17(20(30)31)9-5-11-25-21(23)24)19(29)16-10-6-12-27(16)18(28)15(22)13-14-7-3-2-4-8-14/h14-17H,2-13,22H2,1H3,(H,30,31)(H4,23,24,25)/t15?,16-,17+/m0/s1" 
PRD_000616 InChIKey         InChI                1.03  YJMOXWABORLHFB-LRUHZDSUSA-N                                                                                                                                                      
PRD_000616 SMILES_CANONICAL CACTVS               3.370 "CN([C@@H](CCCNC(N)=N)C(O)=O)C(=O)[C@@H]1CCCN1C(=O)[C@H](N)CC2CCCCC2"                                                                                                            
PRD_000616 SMILES           CACTVS               3.370 "CN([CH](CCCNC(N)=N)C(O)=O)C(=O)[CH]1CCCN1C(=O)[CH](N)CC2CCCCC2"                                                                                                                 
PRD_000616 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN([C@@H](CCCNC(=N)N)C(=O)O)C(=O)[C@@H]1CCCN1C(=O)[C@@H](CC2CCCCC2)N"                                                                                                           
PRD_000616 SMILES           "OpenEye OEToolkits" 1.7.6 "CN(C(CCCNC(=N)N)C(=O)O)C(=O)C1CCCN1C(=O)C(CC2CCCCC2)N"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000616 "SYSTEMATIC NAME" ACDLabs              12.01 3-cyclohexyl-D-alanyl-L-prolyl-N~2~-methyl-L-arginine                                                                           
PRD_000616 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[(2S)-1-[(2R)-2-azanyl-3-cyclohexyl-propanoyl]pyrrolidin-2-yl]carbonyl-methyl-amino]-5-carbamimidamido-pentanoic acid" 
# 
