data_PRDCC_000425
# 
_chem_comp.id                                    PRD_000425 
_chem_comp.name                                  "Caspase-2 Inhibitor;  Ac-VDVAD-Cho" 
_chem_comp.formula                               "C23 H39 N5 O10" 
_chem_comp.formula_weight                        545.583 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000425 C1  C1  C 0 1 N N N 22.383 15.116 48.103 8.295  1.454  -0.481 ACE 1 C    polymer 1 1 1  ? ? ? 
PRD_000425 O1  O1  O 0 1 N N N 21.439 15.772 47.707 8.883  0.973  0.465  ACE 1 O    polymer 1 1 2  ? ? ? 
PRD_000425 C2  C2  C 0 1 N N N 22.198 14.188 49.280 9.046  2.279  -1.494 ACE 1 CH3  polymer 1 1 3  ? ? ? 
PRD_000425 N1  N1  N 0 1 N N N 23.620 15.179 47.492 6.972  1.246  -0.628 VAL 2 N    polymer 1 1 4  ? ? ? 
PRD_000425 C3  C3  C 0 1 N N S 23.784 15.840 46.194 6.243  0.439  0.355  VAL 2 CA   polymer 1 1 5  ? ? ? 
PRD_000425 C4  C4  C 0 1 N N N 23.420 14.896 45.055 5.016  -0.151 -0.291 VAL 2 C    polymer 1 1 6  ? ? ? 
PRD_000425 O2  O2  O 0 1 N N N 23.287 13.684 45.248 4.774  0.080  -1.457 VAL 2 O    polymer 1 1 7  ? ? ? 
PRD_000425 C5  C5  C 0 1 N N N 25.256 16.294 45.998 5.825  1.323  1.531  VAL 2 CB   polymer 1 1 8  ? ? ? 
PRD_000425 C6  C6  C 0 1 N N N 25.676 17.244 47.111 7.071  1.923  2.187  VAL 2 CG1  polymer 1 1 9  ? ? ? 
PRD_000425 C7  C7  C 0 1 N N N 26.167 15.081 45.956 4.922  2.451  1.027  VAL 2 CG2  polymer 1 1 10 ? ? ? 
PRD_000425 N2  N2  N 0 1 N N N 23.263 15.459 43.865 4.188  -0.935 0.427  ASP 3 N    polymer 1 1 11 ? ? ? 
PRD_000425 C8  C8  C 0 1 N N S 22.925 14.673 42.695 2.942  -1.423 -0.169 ASP 3 CA   polymer 1 1 12 ? ? ? 
PRD_000425 C9  C9  C 0 1 N N N 24.181 14.413 41.873 1.845  -0.417 0.066  ASP 3 C    polymer 1 1 13 ? ? ? 
PRD_000425 O3  O3  O 0 1 N N N 25.025 15.292 41.717 2.081  0.607  0.672  ASP 3 O    polymer 1 1 14 ? ? ? 
PRD_000425 C10 C10 C 0 1 N N N 21.881 15.422 41.873 2.557  -2.757 0.475  ASP 3 CB   polymer 1 1 15 ? ? ? 
PRD_000425 C11 C11 C 0 1 N N N 20.600 15.679 42.660 3.610  -3.788 0.162  ASP 3 CG   polymer 1 1 16 ? ? ? 
PRD_000425 O4  O4  O 0 1 N N N 19.978 14.684 43.120 4.516  -3.517 -0.590 ASP 3 OD1  polymer 1 1 17 ? ? ? 
PRD_000425 O5  O5  O 0 1 N N N 20.216 16.868 42.824 3.542  -5.007 0.720  ASP 3 OD2  polymer 1 1 18 ? ? ? 
PRD_000425 N3  N3  N 0 1 N N N 24.316 13.196 41.364 0.601  -0.655 -0.396 VAL 4 N    polymer 1 1 19 ? ? ? 
PRD_000425 C12 C12 C 0 1 N N S 25.470 12.847 40.552 -0.465 0.323  -0.168 VAL 4 CA   polymer 1 1 20 ? ? ? 
PRD_000425 C13 C13 C 0 1 N N N 24.997 12.203 39.258 -1.801 -0.373 -0.200 VAL 4 C    polymer 1 1 21 ? ? ? 
PRD_000425 O6  O6  O 0 1 N N N 23.887 11.687 39.190 -1.901 -1.469 -0.709 VAL 4 O    polymer 1 1 22 ? ? ? 
PRD_000425 C14 C14 C 0 1 N N N 26.416 11.890 41.310 -0.420 1.391  -1.263 VAL 4 CB   polymer 1 1 23 ? ? ? 
PRD_000425 C15 C15 C 0 1 N N N 27.010 12.601 42.522 0.881  2.187  -1.146 VAL 4 CG1  polymer 1 1 24 ? ? ? 
PRD_000425 C16 C16 C 0 1 N N N 25.664 10.650 41.756 -0.486 0.718  -2.635 VAL 4 CG2  polymer 1 1 25 ? ? ? 
PRD_000425 N4  N4  N 0 1 N N N 25.840 12.245 38.233 -2.884 0.222  0.338  ALA 5 N    polymer 1 1 26 ? ? ? 
PRD_000425 C17 C17 C 0 1 N N S 25.481 11.681 36.943 -4.158 -0.498 0.404  ALA 5 CA   polymer 1 1 27 ? ? ? 
PRD_000425 C18 C18 C 0 1 N N N 25.812 10.197 36.853 -5.293 0.492  0.446  ALA 5 C    polymer 1 1 28 ? ? ? 
PRD_000425 O7  O7  O 0 1 N N N 26.606 9.680  37.635 -5.061 1.682  0.423  ALA 5 O    polymer 1 1 29 ? ? ? 
PRD_000425 C19 C19 C 0 1 N N N 26.173 12.445 35.834 -4.190 -1.364 1.665  ALA 5 CB   polymer 1 1 30 ? ? ? 
PRD_000425 C20 C20 C 0 1 N N N 25.875 7.879  34.234 -7.906 1.463  1.995  ASJ 6 C    polymer 1 1 31 ? ? ? 
PRD_000425 N5  N5  N 0 1 N N N 25.161 9.519  35.912 -6.567 0.056  0.510  ASJ 6 N    polymer 1 1 32 ? ? ? 
PRD_000425 O8  O8  O 0 1 N N N 25.819 6.490  33.868 -8.348 0.347  2.771  ASJ 6 O    polymer 1 1 33 ? ? ? 
PRD_000425 C21 C21 C 0 1 N N S 25.363 8.093  35.670 -7.670 1.018  0.550  ASJ 6 CA   polymer 1 1 34 ? ? ? 
PRD_000425 C22 C22 C 0 1 N N N 24.039 7.338  35.843 -8.940 0.362  0.005  ASJ 6 CB   polymer 1 1 35 ? ? ? 
PRD_000425 C23 C23 C 0 1 N N N 23.981 6.534  37.130 -8.750 0.035  -1.453 ASJ 6 CG   polymer 1 1 36 ? ? ? 
PRD_000425 O9  O9  O 0 1 N N N 25.025 6.026  37.585 -9.741 -0.551 -2.144 ASJ 6 OD1  polymer 1 1 37 ? ? ? 
PRD_000425 O10 O10 O 0 1 N N N 22.877 6.402  37.691 -7.707 0.299  -2.001 ASJ 6 OD2  polymer 1 1 38 ? ? ? 
PRD_000425 H1  H1  H 0 1 N N N 21.158 14.246 49.633 9.416  1.630  -2.288 ACE 1 H1   polymer 1 1 39 ? ? ? 
PRD_000425 H2  H2  H 0 1 N N N 22.424 13.156 48.972 8.378  3.028  -1.919 ACE 1 H2   polymer 1 1 40 ? ? ? 
PRD_000425 H3  H3  H 0 1 N N N 22.878 14.486 50.092 9.886  2.775  -1.009 ACE 1 H3   polymer 1 1 41 ? ? ? 
PRD_000425 H4  H4  H 0 1 N N N 24.414 14.768 47.941 6.501  1.631  -1.384 VAL 2 H    polymer 1 1 42 ? ? ? 
PRD_000425 H5  H5  H 0 1 N N N 23.135 16.726 46.144 6.887  -0.364 0.714  VAL 2 HA   polymer 1 1 43 ? ? ? 
PRD_000425 H6  H6  H 0 1 N N N 25.329 16.824 45.037 5.283  0.723  2.262  VAL 2 HB   polymer 1 1 44 ? ? ? 
PRD_000425 H7  H7  H 0 0 N N N 26.720 17.554 46.955 6.773  2.552  3.025  VAL 2 HG11 polymer 1 1 45 ? ? ? 
PRD_000425 H8  H8  H 0 0 N N N 25.025 18.131 47.101 7.714  1.120  2.546  VAL 2 HG12 polymer 1 1 46 ? ? ? 
PRD_000425 H9  H9  H 0 0 N N N 25.586 16.734 48.081 7.613  2.523  1.456  VAL 2 HG13 polymer 1 1 47 ? ? ? 
PRD_000425 H10 H10 H 0 0 N N N 27.208 15.408 45.817 4.034  2.024  0.560  VAL 2 HG21 polymer 1 1 48 ? ? ? 
PRD_000425 H11 H11 H 0 0 N N N 26.081 14.525 46.901 4.624  3.080  1.865  VAL 2 HG22 polymer 1 1 49 ? ? ? 
PRD_000425 H12 H12 H 0 0 N N N 25.873 14.430 45.119 5.464  3.051  0.296  VAL 2 HG23 polymer 1 1 50 ? ? ? 
PRD_000425 H13 H13 H 0 1 N N N 23.380 16.448 43.773 4.417  -1.176 1.338  ASP 3 H    polymer 1 1 51 ? ? ? 
PRD_000425 H14 H14 H 0 1 N N N 22.501 13.707 43.007 3.082  -1.564 -1.240 ASP 3 HA   polymer 1 1 52 ? ? ? 
PRD_000425 H15 H15 H 0 1 N N N 22.304 16.388 41.560 2.481  -2.630 1.555  ASP 3 HB2  polymer 1 1 53 ? ? ? 
PRD_000425 H16 H16 H 0 1 N N N 21.635 14.824 40.983 1.596  -3.087 0.080  ASP 3 HB3  polymer 1 1 54 ? ? ? 
PRD_000425 H17 H17 H 0 1 N N N 19.413 16.875 43.332 4.241  -5.635 0.489  ASP 3 HD2  polymer 1 1 55 ? ? ? 
PRD_000425 H18 H18 H 0 1 N N N 23.613 12.508 41.542 0.413  -1.474 -0.881 VAL 4 H    polymer 1 1 56 ? ? ? 
PRD_000425 H19 H19 H 0 1 N N N 26.031 13.760 40.303 -0.324 0.794  0.805  VAL 4 HA   polymer 1 1 57 ? ? ? 
PRD_000425 H20 H20 H 0 1 N N N 27.232 11.592 40.635 -1.270 2.065  -1.148 VAL 4 HB   polymer 1 1 58 ? ? ? 
PRD_000425 H21 H21 H 0 0 N N N 27.682 11.915 43.057 1.725  1.541  -1.388 VAL 4 HG11 polymer 1 1 59 ? ? ? 
PRD_000425 H22 H22 H 0 0 N N N 27.576 13.483 42.188 0.857  3.027  -1.840 VAL 4 HG12 polymer 1 1 60 ? ? ? 
PRD_000425 H23 H23 H 0 0 N N N 26.199 12.919 43.194 0.989  2.560  -0.128 VAL 4 HG13 polymer 1 1 61 ? ? ? 
PRD_000425 H24 H24 H 0 0 N N N 26.349 9.978  42.294 -1.413 0.151  -2.718 VAL 4 HG21 polymer 1 1 62 ? ? ? 
PRD_000425 H25 H25 H 0 0 N N N 24.839 10.942 42.422 -0.454 1.479  -3.415 VAL 4 HG22 polymer 1 1 63 ? ? ? 
PRD_000425 H26 H26 H 0 0 N N N 25.258 10.131 40.875 0.363  0.044  -2.750 VAL 4 HG23 polymer 1 1 64 ? ? ? 
PRD_000425 H27 H27 H 0 1 N N N 26.737 12.672 38.351 -2.820 1.127  0.681  ALA 5 H    polymer 1 1 65 ? ? ? 
PRD_000425 H28 H28 H 0 1 N N N 24.396 11.791 36.802 -4.263 -1.133 -0.475 ALA 5 HA   polymer 1 1 66 ? ? ? 
PRD_000425 H29 H29 H 0 1 N N N 25.896 12.012 34.862 -5.138 -1.900 1.714  ALA 5 HB1  polymer 1 1 67 ? ? ? 
PRD_000425 H30 H30 H 0 1 N N N 25.863 13.500 35.867 -3.369 -2.080 1.635  ALA 5 HB2  polymer 1 1 68 ? ? ? 
PRD_000425 H31 H31 H 0 1 N N N 27.263 12.379 35.968 -4.085 -0.729 2.545  ALA 5 HB3  polymer 1 1 69 ? ? ? 
PRD_000425 H32 H32 H 0 1 N N N 26.917 8.227  34.168 -8.666 2.244  2.016  ASJ 6 H3   polymer 1 1 70 ? ? ? 
PRD_000425 H33 H33 H 0 1 N Y N 25.250 8.459  33.539 -6.976 1.850  2.412  ASJ 6 HAA  polymer 1 1 71 ? ? ? 
PRD_000425 H34 H34 H 0 1 N N N 24.501 10.009 35.343 -6.753 -0.896 0.528  ASJ 6 H    polymer 1 1 72 ? ? ? 
PRD_000425 H35 H35 H 0 1 N N N 26.139 6.383  32.980 -8.518 0.557  3.700  ASJ 6 HO   polymer 1 1 73 ? ? ? 
PRD_000425 H36 H36 H 0 1 N N N 26.102 7.690  36.378 -7.419 1.885  -0.060 ASJ 6 HA   polymer 1 1 74 ? ? ? 
PRD_000425 H37 H37 H 0 1 N N N 23.217 8.068  35.848 -9.142 -0.555 0.560  ASJ 6 HB   polymer 1 1 75 ? ? ? 
PRD_000425 H38 H38 H 0 1 N N N 23.913 6.650  34.994 -9.780 1.047  0.118  ASJ 6 HBA  polymer 1 1 76 ? ? ? 
PRD_000425 H39 H39 H 0 0 N N N 24.825 5.554  38.385 -9.573 -0.741 -3.077 ASJ 6 HOD1 polymer 1 1 77 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000425 C1  O1  DOUB N N 1  
PRD_000425 C1  C2  SING N N 2  
PRD_000425 C2  H1  SING N N 3  
PRD_000425 C2  H2  SING N N 4  
PRD_000425 C2  H3  SING N N 5  
PRD_000425 N1  C3  SING N N 6  
PRD_000425 N1  H4  SING N N 7  
PRD_000425 C3  C4  SING N N 8  
PRD_000425 C3  C5  SING N N 9  
PRD_000425 C3  H5  SING N N 10 
PRD_000425 C4  O2  DOUB N N 11 
PRD_000425 C5  C6  SING N N 12 
PRD_000425 C5  C7  SING N N 13 
PRD_000425 C5  H6  SING N N 14 
PRD_000425 C6  H7  SING N N 15 
PRD_000425 C6  H8  SING N N 16 
PRD_000425 C6  H9  SING N N 17 
PRD_000425 C7  H10 SING N N 18 
PRD_000425 C7  H11 SING N N 19 
PRD_000425 C7  H12 SING N N 20 
PRD_000425 N2  C8  SING N N 21 
PRD_000425 N2  H13 SING N N 22 
PRD_000425 C8  C9  SING N N 23 
PRD_000425 C8  C10 SING N N 24 
PRD_000425 C8  H14 SING N N 25 
PRD_000425 C9  O3  DOUB N N 26 
PRD_000425 C10 C11 SING N N 27 
PRD_000425 C10 H15 SING N N 28 
PRD_000425 C10 H16 SING N N 29 
PRD_000425 C11 O4  DOUB N N 30 
PRD_000425 C11 O5  SING N N 31 
PRD_000425 O5  H17 SING N N 32 
PRD_000425 N3  C12 SING N N 33 
PRD_000425 N3  H18 SING N N 34 
PRD_000425 C12 C13 SING N N 35 
PRD_000425 C12 C14 SING N N 36 
PRD_000425 C12 H19 SING N N 37 
PRD_000425 C13 O6  DOUB N N 38 
PRD_000425 C14 C15 SING N N 39 
PRD_000425 C14 C16 SING N N 40 
PRD_000425 C14 H20 SING N N 41 
PRD_000425 C15 H21 SING N N 42 
PRD_000425 C15 H22 SING N N 43 
PRD_000425 C15 H23 SING N N 44 
PRD_000425 C16 H24 SING N N 45 
PRD_000425 C16 H25 SING N N 46 
PRD_000425 C16 H26 SING N N 47 
PRD_000425 N4  C17 SING N N 48 
PRD_000425 N4  H27 SING N N 49 
PRD_000425 C17 C18 SING N N 50 
PRD_000425 C17 C19 SING N N 51 
PRD_000425 C17 H28 SING N N 52 
PRD_000425 C18 O7  DOUB N N 53 
PRD_000425 C19 H29 SING N N 54 
PRD_000425 C19 H30 SING N N 55 
PRD_000425 C19 H31 SING N N 56 
PRD_000425 C20 O8  SING N N 57 
PRD_000425 C20 C21 SING N N 58 
PRD_000425 C20 H32 SING N N 59 
PRD_000425 C20 H33 SING N N 60 
PRD_000425 C21 N5  SING N N 61 
PRD_000425 N5  H34 SING N N 62 
PRD_000425 O8  H35 SING N N 63 
PRD_000425 C22 C21 SING N N 64 
PRD_000425 C21 H36 SING N N 65 
PRD_000425 C22 C23 SING N N 66 
PRD_000425 C22 H37 SING N N 67 
PRD_000425 C22 H38 SING N N 68 
PRD_000425 C23 O10 DOUB N N 69 
PRD_000425 C23 O9  SING N N 70 
PRD_000425 O9  H39 SING N N 71 
PRD_000425 C1  N1  SING N N 72 
PRD_000425 N5  C18 SING N N 73 
PRD_000425 C4  N2  SING N N 74 
PRD_000425 C9  N3  SING N N 75 
PRD_000425 C13 N4  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000425 SMILES           ACDLabs              12.01 "O=C(NC(CC(=O)O)CO)C(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C)C(C)C)CC(=O)O)C(C)C)C"                                                                                                                                                                                    
PRD_000425 InChI            InChI                1.03  "InChI=1S/C23H39N5O10/c1-10(2)18(25-13(6)30)23(38)27-15(8-17(33)34)21(36)28-19(11(3)4)22(37)24-12(5)20(35)26-14(9-29)7-16(31)32/h10-12,14-15,18-19,29H,7-9H2,1-6H3,(H,24,37)(H,25,30)(H,26,35)(H,27,38)(H,28,36)(H,31,32)(H,33,34)/t12-,14+,15?,18?,19?/m0/s1" 
PRD_000425 InChIKey         InChI                1.03  GMNMHWUHFJLGLK-BPIPLQBOSA-N                                                                                                                                                                                                                                    
PRD_000425 SMILES_CANONICAL CACTVS               3.370 "CC(C)[C@H](NC(C)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C)C(=O)N[C@H](CO)CC(O)=O"                                                                                                                                                             
PRD_000425 SMILES           CACTVS               3.370 "CC(C)[CH](NC(C)=O)C(=O)N[CH](CC(O)=O)C(=O)N[CH](C(C)C)C(=O)N[CH](C)C(=O)N[CH](CO)CC(O)=O"                                                                                                                                                                     
PRD_000425 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](CC(=O)O)CO)NC(=O)[C@H](C(C)C)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](C(C)C)NC(=O)C"                                                                                                                                                              
PRD_000425 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(CC(=O)O)C(=O)NC(C(C)C)C(=O)NC(C)C(=O)NC(CC(=O)O)CO)NC(=O)C"                                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000425 "SYSTEMATIC NAME" ACDLabs              12.01 "N-acetyl-L-valyl-L-alpha-aspartyl-L-valyl-N-[(2R)-1-carboxy-3-hydroxypropan-2-yl]-L-alaninamide"                                                                                                                                               
PRD_000425 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S)-3-[[(2S)-2-acetamido-3-methyl-butanoyl]amino]-4-[[(2S)-1-[[(2S)-1-[[(2S)-1,4-bis(oxidanyl)-4-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-4-oxidanylidene-butanoic acid" 
# 
