data_PRDCC_002390
# 
_chem_comp.id                                    PRD_002390 
_chem_comp.name                                  "Papain-like protease peptide inhibitor VIR251" 
_chem_comp.formula                               "C22 H33 N5 O7" 
_chem_comp.formula_weight                        479.527 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002390 C1  C1  C 0 1 N N N 5.437  -30.167 -41.496 5.520   2.500  0.958  ACY 1 C    polymer 1 1 1  ? ? ? 
PRD_002390 O1  O1  O 0 1 N N N 6.139  -31.112 -41.351 4.865   1.886  1.774  ACY 1 O    polymer 1 1 2  ? ? ? 
PRD_002390 C2  C2  C 0 1 N N N 4.077  -30.285 -42.179 6.615   3.429  1.416  ACY 1 CH3  polymer 1 1 3  ? ? ? 
PRD_002390 N1  N1  N 0 1 N N N 5.865  -28.869 -41.028 5.272   2.348  -0.358 73O 2 N    polymer 1 1 4  ? ? ? 
PRD_002390 C3  C3  C 0 1 N N S 7.152  -28.745 -40.389 4.211   1.440  -0.803 73O 2 CA   polymer 1 1 5  ? ? ? 
PRD_002390 C4  C4  C 0 1 N N N 6.913  -28.605 -38.893 2.891   1.892  -0.233 73O 2 C    polymer 1 1 6  ? ? ? 
PRD_002390 C5  C5  C 0 1 N N N 7.908  -27.523 -40.933 4.517   0.022  -0.318 73O 2 C52  polymer 1 1 7  ? ? ? 
PRD_002390 C6  C6  C 0 1 N N N 8.026  -27.554 -42.463 5.793   -0.484 -0.993 73O 2 C54  polymer 1 1 8  ? ? ? 
PRD_002390 C7  C7  C 0 1 Y N N 8.786  -28.770 -42.990 6.094   -1.882 -0.516 73O 2 C57  polymer 1 1 9  ? ? ? 
PRD_002390 C8  C8  C 0 1 Y N N 10.089 -28.996 -42.577 5.579   -2.970 -1.196 73O 2 C60  polymer 1 1 10 ? ? ? 
PRD_002390 C9  C9  C 0 1 Y N N 10.769 -30.108 -43.064 5.853   -4.251 -0.760 73O 2 C61  polymer 1 1 11 ? ? ? 
PRD_002390 C10 C10 C 0 1 Y N N 10.162 -30.977 -43.959 6.647   -4.446 0.361  73O 2 C62  polymer 1 1 12 ? ? ? 
PRD_002390 C11 C11 C 0 1 Y N N 8.864  -30.743 -44.387 7.163   -3.353 1.042  73O 2 C63  polymer 1 1 13 ? ? ? 
PRD_002390 C12 C12 C 0 1 Y N N 8.185  -29.637 -43.895 6.890   -2.073 0.598  73O 2 C64  polymer 1 1 14 ? ? ? 
PRD_002390 O2  O2  O 0 1 N N N 10.870 -32.084 -44.443 6.918   -5.706 0.793  73O 2 O69  polymer 1 1 15 ? ? ? 
PRD_002390 O3  O3  O 0 1 N N N 5.841  -28.362 -38.437 2.866   2.622  0.735  73O 2 O    polymer 1 1 16 ? ? ? 
PRD_002390 N2  N2  N 0 1 N N N 8.028  -28.818 -38.013 1.738   1.486  -0.800 DPP 3 N    polymer 1 1 17 ? ? ? 
PRD_002390 C13 C13 C 0 1 N N S 7.885  -28.716 -36.572 0.455   1.925  -0.247 DPP 3 CA   polymer 1 1 18 ? ? ? 
PRD_002390 C14 C14 C 0 1 N N N 9.103  -27.935 -36.116 -0.615  0.925  -0.603 DPP 3 C    polymer 1 1 19 ? ? ? 
PRD_002390 O4  O4  O 0 1 N N N 10.098 -28.427 -35.684 -0.333  -0.058 -1.254 DPP 3 O    polymer 1 1 20 ? ? ? 
PRD_002390 C15 C15 C 0 1 N N N 7.914  -30.100 -35.923 0.089   3.292  -0.830 DPP 3 CB   polymer 1 1 21 ? ? ? 
PRD_002390 N3  N3  N 0 1 N N N 6.664  -30.771 -36.227 1.186   4.238  -0.586 DPP 3 NG   polymer 1 1 22 ? ? ? 
PRD_002390 N4  N4  N 0 1 N N N 9.004  -26.514 -36.216 -1.885  1.123  -0.196 GLY 4 N    polymer 1 1 23 ? ? ? 
PRD_002390 C16 C16 C 0 1 N N N 10.133 -25.706 -35.829 -2.924  0.150  -0.542 GLY 4 CA   polymer 1 1 24 ? ? ? 
PRD_002390 C17 C17 C 0 1 N N N 9.861  -24.992 -34.505 -4.244  0.602  0.027  GLY 4 C    polymer 1 1 25 ? ? ? 
PRD_002390 O5  O5  O 0 1 N N N 8.759  -24.695 -34.153 -4.310  1.635  0.660  GLY 4 O    polymer 1 1 26 ? ? ? 
PRD_002390 N5  N5  N 0 1 N N N 11.023 -24.716 -33.705 -5.352  -0.141 -0.166 GVE 5 N    polymer 1 1 27 ? ? ? 
PRD_002390 C18 C18 C 0 1 N N N 11.030 -24.037 -32.420 -6.635  0.298  0.387  GVE 5 C1   polymer 1 1 28 ? ? ? 
PRD_002390 C19 C19 C 0 1 N N N 11.986 -22.931 -32.821 -7.721  -0.717 0.026  GVE 5 CB   polymer 1 1 29 ? ? ? 
PRD_002390 C20 C20 C 0 1 N N N 13.388 -22.825 -32.263 -9.061  -0.258 0.604  GVE 5 CG   polymer 1 1 30 ? ? ? 
PRD_002390 C21 C21 C 0 1 N N N 13.685 -23.782 -31.136 -10.130 -1.259 0.249  GVE 5 C    polymer 1 1 31 ? ? ? 
PRD_002390 O6  O6  O 0 1 N N N 14.265 -25.037 -31.325 -11.395 -1.062 0.653  GVE 5 OXT  polymer 1 1 32 ? ? ? 
PRD_002390 O7  O7  O 0 1 N N N 13.405 -23.387 -30.060 -9.849  -2.238 -0.401 GVE 5 O    polymer 1 1 33 ? ? ? 
PRD_002390 C22 C22 C 0 1 N N N 14.940 -25.501 -30.189 -12.372 -2.066 0.274  GVE 5 CH3  polymer 1 1 34 ? ? ? 
PRD_002390 H1  H1  H 0 1 N N N 3.905  -31.330 -42.478 6.669   3.418  2.504  ACY 1 H1   polymer 1 1 35 ? ? ? 
PRD_002390 H2  H2  H 0 1 N N N 3.288  -29.969 -41.481 7.567   3.100  1.001  ACY 1 H2   polymer 1 1 36 ? ? ? 
PRD_002390 H3  H3  H 0 1 N N N 4.057  -29.641 -43.071 6.399   4.441  1.074  ACY 1 H3   polymer 1 1 37 ? ? ? 
PRD_002390 H4  H4  H 0 1 N N N 5.278  -28.068 -41.145 5.795   2.839  -1.010 73O 2 H2   polymer 1 1 38 ? ? ? 
PRD_002390 H5  H5  H 0 1 N N N 7.755  -29.647 -40.573 4.159   1.449  -1.892 73O 2 HA   polymer 1 1 39 ? ? ? 
PRD_002390 H6  H6  H 0 1 N N N 7.369  -26.611 -40.637 4.657   0.030  0.763  73O 2 H5   polymer 1 1 40 ? ? ? 
PRD_002390 H7  H7  H 0 1 N N N 8.919  -27.509 -40.499 3.686   -0.636 -0.572 73O 2 H6   polymer 1 1 41 ? ? ? 
PRD_002390 H8  H8  H 0 1 N N N 8.553  -26.645 -42.790 5.653   -0.492 -2.075 73O 2 H7   polymer 1 1 42 ? ? ? 
PRD_002390 H9  H9  H 0 1 N N N 7.012  -27.565 -42.890 6.624   0.174  -0.739 73O 2 H8   polymer 1 1 43 ? ? ? 
PRD_002390 H10 H10 H 0 1 N N N 10.570 -28.319 -41.887 4.960   -2.817 -2.068 73O 2 H9   polymer 1 1 44 ? ? ? 
PRD_002390 H11 H11 H 0 1 N N N 11.782 -30.297 -42.741 5.450   -5.101 -1.291 73O 2 H10  polymer 1 1 45 ? ? ? 
PRD_002390 H12 H12 H 0 1 N N N 8.389  -31.410 -45.091 7.782   -3.502 1.914  73O 2 H11  polymer 1 1 46 ? ? ? 
PRD_002390 H13 H13 H 0 1 N N N 7.173  -29.447 -44.221 7.292   -1.222 1.128  73O 2 H12  polymer 1 1 47 ? ? ? 
PRD_002390 H14 H14 H 0 1 N N N 11.737 -32.100 -44.055 7.716   -6.091 0.404  73O 2 H13  polymer 1 1 48 ? ? ? 
PRD_002390 H15 H15 H 0 1 N N N 8.922  -29.041 -38.401 1.758   0.902  -1.575 DPP 3 H    polymer 1 1 49 ? ? ? 
PRD_002390 H16 H16 H 0 1 N N N 6.962  -28.185 -36.296 0.534   2.002  0.837  DPP 3 HA   polymer 1 1 50 ? ? ? 
PRD_002390 H17 H17 H 0 1 N N N 8.756  -30.682 -36.325 -0.077  3.197  -1.903 DPP 3 HB2  polymer 1 1 51 ? ? ? 
PRD_002390 H18 H18 H 0 1 N N N 8.026  -29.998 -34.834 -0.820  3.659  -0.352 DPP 3 HB3  polymer 1 1 52 ? ? ? 
PRD_002390 H19 H19 H 0 1 N N N 6.663  -31.680 -35.810 2.055   3.889  -0.964 DPP 3 HG1  polymer 1 1 53 ? ? ? 
PRD_002390 H20 H20 H 0 1 N N N 5.902  -30.237 -35.862 0.969   5.148  -0.962 DPP 3 HG2  polymer 1 1 54 ? ? ? 
PRD_002390 H21 H21 H 0 1 N N N 8.164  -26.086 -36.550 -2.110  1.909  0.325  GLY 4 H    polymer 1 1 55 ? ? ? 
PRD_002390 H22 H22 H 0 1 N N N 11.017 -26.351 -35.716 -3.004  0.073  -1.627 GLY 4 HA2  polymer 1 1 56 ? ? ? 
PRD_002390 H23 H23 H 0 1 N N N 10.325 -24.956 -36.611 -2.664  -0.823 -0.127 GLY 4 HA3  polymer 1 1 57 ? ? ? 
PRD_002390 H24 H24 H 0 1 N N N 11.906 -25.018 -34.065 -5.299  -0.967 -0.672 GVE 5 H2   polymer 1 1 58 ? ? ? 
PRD_002390 H25 H25 H 0 1 N N N 10.038 -23.657 -32.136 -6.555  0.375  1.472  GVE 5 HA1  polymer 1 1 59 ? ? ? 
PRD_002390 H26 H26 H 0 1 N N N 11.427 -24.667 -31.610 -6.895  1.272  -0.028 GVE 5 HA2  polymer 1 1 60 ? ? ? 
PRD_002390 H27 H27 H 0 1 N N N 12.097 -23.004 -33.913 -7.800  -0.794 -1.058 GVE 5 HB1  polymer 1 1 61 ? ? ? 
PRD_002390 H28 H28 H 0 1 N N N 11.484 -21.986 -32.566 -7.460  -1.691 0.442  GVE 5 HB2  polymer 1 1 62 ? ? ? 
PRD_002390 H29 H29 H 0 1 N N N 14.099 -23.023 -33.079 -8.981  -0.182 1.689  GVE 5 HG1  polymer 1 1 63 ? ? ? 
PRD_002390 H30 H30 H 0 1 N N N 13.533 -21.800 -31.891 -9.321  0.715  0.189  GVE 5 HG2  polymer 1 1 64 ? ? ? 
PRD_002390 H31 H31 H 0 0 N N N 15.374 -26.490 -30.398 -13.351 -1.786 0.664  GVE 5 HH31 polymer 1 1 65 ? ? ? 
PRD_002390 H32 H32 H 0 0 N N N 15.743 -24.796 -29.926 -12.420 -2.135 -0.812 GVE 5 HH32 polymer 1 1 66 ? ? ? 
PRD_002390 H33 H33 H 0 0 N N N 14.233 -25.581 -29.350 -12.080 -3.032 0.687  GVE 5 HH33 polymer 1 1 67 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002390 C1  O1  DOUB N N 1  
PRD_002390 C1  C2  SING N N 2  
PRD_002390 C2  H1  SING N N 3  
PRD_002390 C2  H2  SING N N 4  
PRD_002390 C2  H3  SING N N 5  
PRD_002390 N1  C3  SING N N 6  
PRD_002390 C12 C11 DOUB Y N 7  
PRD_002390 C12 C7  SING Y N 8  
PRD_002390 O3  C4  DOUB N N 9  
PRD_002390 C11 C10 SING Y N 10 
PRD_002390 C3  C4  SING N N 11 
PRD_002390 C3  C5  SING N N 12 
PRD_002390 C6  C7  SING N N 13 
PRD_002390 C6  C5  SING N N 14 
PRD_002390 C7  C8  DOUB Y N 15 
PRD_002390 C10 O2  SING N N 16 
PRD_002390 C10 C9  DOUB Y N 17 
PRD_002390 C8  C9  SING Y N 18 
PRD_002390 N1  H4  SING N N 19 
PRD_002390 C3  H5  SING N N 20 
PRD_002390 C5  H6  SING N N 21 
PRD_002390 C5  H7  SING N N 22 
PRD_002390 C6  H8  SING N N 23 
PRD_002390 C6  H9  SING N N 24 
PRD_002390 C8  H10 SING N N 25 
PRD_002390 C9  H11 SING N N 26 
PRD_002390 C11 H12 SING N N 27 
PRD_002390 C12 H13 SING N N 28 
PRD_002390 O2  H14 SING N N 29 
PRD_002390 N2  C13 SING N N 30 
PRD_002390 N2  H15 SING N N 31 
PRD_002390 C13 C14 SING N N 32 
PRD_002390 C13 C15 SING N N 33 
PRD_002390 C13 H16 SING N N 34 
PRD_002390 C14 O4  DOUB N N 35 
PRD_002390 C15 N3  SING N N 36 
PRD_002390 C15 H17 SING N N 37 
PRD_002390 C15 H18 SING N N 38 
PRD_002390 N3  H19 SING N N 39 
PRD_002390 N3  H20 SING N N 40 
PRD_002390 N4  C16 SING N N 41 
PRD_002390 N4  H21 SING N N 42 
PRD_002390 C16 C17 SING N N 43 
PRD_002390 C16 H22 SING N N 44 
PRD_002390 C16 H23 SING N N 45 
PRD_002390 C17 O5  DOUB N N 46 
PRD_002390 N5  C18 SING N N 47 
PRD_002390 N5  H24 SING N N 48 
PRD_002390 C18 C19 SING N N 49 
PRD_002390 C18 H25 SING N N 50 
PRD_002390 C18 H26 SING N N 51 
PRD_002390 C19 C20 SING N N 52 
PRD_002390 C19 H27 SING N N 53 
PRD_002390 C19 H28 SING N N 54 
PRD_002390 C20 C21 SING N N 55 
PRD_002390 C20 H29 SING N N 56 
PRD_002390 C20 H30 SING N N 57 
PRD_002390 C21 O6  SING N N 58 
PRD_002390 C21 O7  DOUB N N 59 
PRD_002390 O6  C22 SING N N 60 
PRD_002390 C22 H31 SING N N 61 
PRD_002390 C22 H32 SING N N 62 
PRD_002390 C22 H33 SING N N 63 
PRD_002390 C1  N1  SING N N 64 
PRD_002390 C4  N2  SING N N 65 
PRD_002390 C14 N4  SING N N 66 
PRD_002390 C17 N5  SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002390 InChI            InChI                1.06  "InChI=1S/C22H33N5O7/c1-14(28)26-17(10-7-15-5-8-16(29)9-6-15)22(33)27-18(12-23)21(32)25-13-19(30)24-11-3-4-20(31)34-2/h5-6,8-9,17-18,29H,3-4,7,10-13,23H2,1-2H3,(H,24,30)(H,25,32)(H,26,28)(H,27,33)/t17-,18-/m0/s1" 
PRD_002390 InChIKey         InChI                1.06  RHEYQTLFHHFTMS-ROUUACIJSA-N                                                                                                                                                                                          
PRD_002390 SMILES_CANONICAL CACTVS               3.385 "COC(=O)CCCNC(=O)CNC(=O)[C@H](CN)NC(=O)[C@H](CCc1ccc(O)cc1)NC(C)=O"                                                                                                                                                  
PRD_002390 SMILES           CACTVS               3.385 "COC(=O)CCCNC(=O)CNC(=O)[CH](CN)NC(=O)[CH](CCc1ccc(O)cc1)NC(C)=O"                                                                                                                                                    
PRD_002390 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCc1ccc(cc1)O)C(=O)N[C@@H](CN)C(=O)NCC(=O)NCCCC(=O)OC"                                                                                                                                                
PRD_002390 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCc1ccc(cc1)O)C(=O)NC(CN)C(=O)NCC(=O)NCCCC(=O)OC"                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002390 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 4-[2-[[(2~{S})-2-[[(2~{S})-2-acetamido-4-(4-hydroxyphenyl)butanoyl]amino]-3-azanyl-propanoyl]amino]ethanoylamino]butanoate" 
# 
