data_PRD_000198
# 
_pdbx_reference_molecule.prd_id                       PRD_000198 
_pdbx_reference_molecule.name                         "BETA LICHENICIDIN PREPEPTIDE" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Polypeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C133 H200 N36 O37 S4" 
_pdbx_reference_molecule.formula_weight               3023.490 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;LICHENICIDIN VK21 A2 IS A LANTIBIOTIC. THE LANTIBIOTICS ARE
ARE CHARACTERIZED BY THIOESTER AMINO ACIDS LANTHIONINE
AND/OR METHYLLANTHIONINE.
HERE, LICHENICIDIN VK21 IS REPRESENTED BY THE SEQUENCE (SEQRES)
;
_pdbx_reference_molecule.description                  
;LICHENICIDIN VK21 IS A TETRACYCLIC PEPTIDE. POST TRANSLATIONAL
MATURATION OF LANTIBIOTICS INVOLVES THE ENZYMIC CONVERSION OF THR, AND
SER INTO DEHYDRATED AMINO ACIDS AND THE FORMATION OF THIOETHER BONDS
WITH CYSTEINE. THIOETHER BONDS WITH CYSTEINE RESULT IN FOUR RINGS.
THIS IS FOLLOWED BY MEMBRANE TRANSLOCATION AND CLEAVAGE OF THE
MODIFIED PRECURSOR.
;
_pdbx_reference_molecule.representative_PDB_id_code   2kto 
# 
_pdbx_reference_entity_list.prd_id          PRD_000198 
_pdbx_reference_entity_list.ref_entity_id   1 
_pdbx_reference_entity_list.component_id    1 
_pdbx_reference_entity_list.type            polymer 
_pdbx_reference_entity_list.details         "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 32" 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000198 1 1  C  2KT 1  N  DBU 2  sing 1 ? ? ? 
PRD_000198 1 2  C  DBU 2  N  PRO 3  sing 1 ? ? ? 
PRD_000198 1 3  C  PRO 3  N  ALA 4  sing 1 ? ? ? 
PRD_000198 1 4  C  ALA 4  N  DBU 5  sing 1 ? ? ? 
PRD_000198 1 5  C  DBU 5  N  DBU 6  sing 1 ? ? ? 
PRD_000198 1 6  C  DBU 6  N  DAL 7  sing 1 ? ? ? 
PRD_000198 1 7  C  DAL 7  N  DHA 8  sing 1 ? ? ? 
PRD_000198 1 8  CB DAL 7  SG CYS 11 sing 1 ? ? ? 
PRD_000198 1 9  C  DHA 8  N  TRP 9  sing 1 ? ? ? 
PRD_000198 1 10 C  TRP 9  N  THR 10 sing 1 ? ? ? 
PRD_000198 1 11 C  THR 10 N  CYS 11 sing 1 ? ? ? 
PRD_000198 1 12 C  CYS 11 N  ILE 12 sing 1 ? ? ? 
PRD_000198 1 13 C  ILE 12 N  DBU 13 sing 1 ? ? ? 
PRD_000198 1 14 C  DBU 13 N  ALA 14 sing 1 ? ? ? 
PRD_000198 1 15 C  ALA 14 N  GLY 15 sing 1 ? ? ? 
PRD_000198 1 16 C  GLY 15 N  VAL 16 sing 1 ? ? ? 
PRD_000198 1 17 C  VAL 16 N  DBU 17 sing 1 ? ? ? 
PRD_000198 1 18 C  DBU 17 N  VAL 18 sing 1 ? ? ? 
PRD_000198 1 19 C  VAL 18 N  DAL 19 sing 1 ? ? ? 
PRD_000198 1 20 C  DAL 19 N  ALA 20 sing 1 ? ? ? 
PRD_000198 1 21 CB DAL 19 SG CYS 23 sing 1 ? ? ? 
PRD_000198 1 22 C  ALA 20 N  SER 21 sing 1 ? ? ? 
PRD_000198 1 23 C  SER 21 N  LEU 22 sing 1 ? ? ? 
PRD_000198 1 24 C  LEU 22 N  CYS 23 sing 1 ? ? ? 
PRD_000198 1 25 C  CYS 23 N  PRO 24 sing 1 ? ? ? 
PRD_000198 1 26 C  PRO 24 N  DBB 25 sing 1 ? ? ? 
PRD_000198 1 27 CB DBB 25 SG CYS 28 sing 1 ? ? ? 
PRD_000198 1 28 C  DBB 25 N  DBU 26 sing 1 ? ? ? 
PRD_000198 1 29 C  DBU 26 N  LYS 27 sing 1 ? ? ? 
PRD_000198 1 30 C  LYS 27 N  CYS 28 sing 1 ? ? ? 
PRD_000198 1 31 C  CYS 28 N  DBB 29 sing 1 ? ? ? 
PRD_000198 1 32 CB DBB 29 SG CYS 32 sing 1 ? ? ? 
PRD_000198 1 33 C  DBB 29 N  SER 30 sing 1 ? ? ? 
PRD_000198 1 34 C  SER 30 N  ARG 31 sing 1 ? ? ? 
PRD_000198 1 35 C  ARG 31 N  CYS 32 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000198 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         P86476 
_pdbx_reference_entity_poly.db_name         UNP 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000198 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000198 1 1  2KT THR N Y 
PRD_000198 1 2  DBU THR N Y 
PRD_000198 1 3  PRO PRO N Y 
PRD_000198 1 4  ALA ALA N Y 
PRD_000198 1 5  DBU THR N Y 
PRD_000198 1 6  DBU THR N Y 
PRD_000198 1 7  DAL SER N Y 
PRD_000198 1 8  DHA SER N Y 
PRD_000198 1 9  TRP TRP N Y 
PRD_000198 1 10 THR THR N Y 
PRD_000198 1 11 CYS CYS N Y 
PRD_000198 1 12 ILE ILE N Y 
PRD_000198 1 13 DBU THR N Y 
PRD_000198 1 14 ALA ALA N Y 
PRD_000198 1 15 GLY GLY N Y 
PRD_000198 1 16 VAL VAL N Y 
PRD_000198 1 17 DBU THR N Y 
PRD_000198 1 18 VAL VAL N Y 
PRD_000198 1 19 DAL SER N Y 
PRD_000198 1 20 ALA ALA N Y 
PRD_000198 1 21 SER SER N Y 
PRD_000198 1 22 LEU LEU N Y 
PRD_000198 1 23 CYS CYS N Y 
PRD_000198 1 24 PRO PRO N Y 
PRD_000198 1 25 DBB THR N Y 
PRD_000198 1 26 DBU THR N Y 
PRD_000198 1 27 LYS LYS N Y 
PRD_000198 1 28 CYS CYS N Y 
PRD_000198 1 29 DBB THR N Y 
PRD_000198 1 30 SER SER N Y 
PRD_000198 1 31 ARG ARG N Y 
PRD_000198 1 32 CYS CYS N Y 
# 
_pdbx_reference_entity_src_nat.prd_id                PRD_000198 
_pdbx_reference_entity_src_nat.ref_entity_id         1 
_pdbx_reference_entity_src_nat.ordinal               1 
_pdbx_reference_entity_src_nat.taxid                 1402 
_pdbx_reference_entity_src_nat.organism_scientific   "bacillus licheniformis VK21" 
_pdbx_reference_entity_src_nat.source                UniProt 
_pdbx_reference_entity_src_nat.db_code               P86476 
_pdbx_reference_entity_src_nat.db_name               UniProtKB 
_pdbx_reference_entity_src_nat.strain                ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000198 2012-02-03 RCSB "Create molecule"    
PRD_000198 2012-07-09 PDBE "Other modification" 
PRD_000198 2012-07-31 RCSB "Other modification" 
PRD_000198 2012-12-12 RCSB "Initial release"    
PRD_000198 2013-06-03 RCSB "Other modification" 
PRD_000198 2017-05-04 RCSB "Other modification" 
PRD_000198 2023-09-20 PDBE "Modify audit"       
PRD_000198 2023-11-03 PDBE "Other modification" 
# 
