data_PRD_000117
# 
_pdbx_reference_molecule.prd_id                       PRD_000117 
_pdbx_reference_molecule.name                         "ARYLOMYCIN A2" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Lipopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C42 H60 N6 O11" 
_pdbx_reference_molecule.formula_weight               824.959 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;ARYLOMYCIN A2 IS A CYCLIC LIPOHEXAPEPTIDE, A MEMBER OF THE ARYLOMYCIN FAMILY. ALL MEMBERS HAVE A FATTY ACID AT THE
N-TERM AND A CORE STRUCTURE OF TRIPEPTIDE MACROCYCLE FORMED BY A C-C BIARYL LINKAGE BETWEEN RESIDUES 4 AND 6. HERE,
ARYLOMYCIN A2 IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND ONE LIGAND (HET) M12.
;
_pdbx_reference_molecule.description                  
;ARYLOMYCIN A2 IS A BIARYL-BRIDGED LIPOPEPTIDE. THE SCAFFOLD IS MADE OF TWO PARTS: (1) N-TERM EXOCYCLIC TRIPEPTIDE (2)
A TRICYCLIC PEPTIDE, WITH [3,3] BIARYL BOND BETWEEN RESIDUE 4 AND 6 AN ISO-C12 FATTY ACID IS LINKED TO RESIDUE 1.
;
_pdbx_reference_molecule.representative_PDB_id_code   3iiq 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000117 1 1 polymer     "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 6" 
PRD_000117 2 2 non-polymer "10-METHYLUNDECANOIC ACID"              
# 
_pdbx_reference_entity_nonpoly.prd_id          PRD_000117 
_pdbx_reference_entity_nonpoly.ref_entity_id   2 
_pdbx_reference_entity_nonpoly.name            "10-METHYLUNDECANOIC ACID" 
_pdbx_reference_entity_nonpoly.chem_comp_id    M12 
_pdbx_reference_entity_nonpoly.details         ? 
# 
_pdbx_reference_entity_link.prd_id              PRD_000117 
_pdbx_reference_entity_link.link_id             1 
_pdbx_reference_entity_link.link_class          PN 
_pdbx_reference_entity_link.ref_entity_id_1     1 
_pdbx_reference_entity_link.entity_seq_num_1    1 
_pdbx_reference_entity_link.comp_id_1           DSE 
_pdbx_reference_entity_link.atom_id_1           N 
_pdbx_reference_entity_link.ref_entity_id_2     2 
_pdbx_reference_entity_link.entity_seq_num_2    ? 
_pdbx_reference_entity_link.comp_id_2           M12 
_pdbx_reference_entity_link.atom_id_2           C1 
_pdbx_reference_entity_link.value_order         sing 
_pdbx_reference_entity_link.component_1         1 
_pdbx_reference_entity_link.component_2         2 
_pdbx_reference_entity_link.details             ? 
_pdbx_reference_entity_link.nonpoly_res_num_1   ? 
_pdbx_reference_entity_link.nonpoly_res_num_2   ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000117 1 1 C   DSE 1 N   DAL 2 sing 1 ? ? ? 
PRD_000117 1 2 C   DAL 2 N   GLY 3 sing 1 ? ? ? 
PRD_000117 1 3 C   GLY 3 N   5PG 4 sing 1 ? ? ? 
PRD_000117 1 4 CD2 5PG 4 CE2 TYR 6 sing 1 ? ? ? 
PRD_000117 1 5 C   5PG 4 N   ALA 5 sing 1 ? ? ? 
PRD_000117 1 6 C   ALA 5 N   TYR 6 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000117 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         NOR01115 
_pdbx_reference_entity_poly.db_name         NOR 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000117 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        Y 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000117 1 1 DSE SER N Y 
PRD_000117 1 2 DAL ALA N Y 
PRD_000117 1 3 GLY GLY N Y 
PRD_000117 1 4 5PG GLY N Y 
PRD_000117 1 5 ALA ALA N Y 
PRD_000117 1 6 TYR TYR N Y 
# 
loop_
_pdbx_reference_entity_src_nat.prd_id 
_pdbx_reference_entity_src_nat.ref_entity_id 
_pdbx_reference_entity_src_nat.ordinal 
_pdbx_reference_entity_src_nat.taxid 
_pdbx_reference_entity_src_nat.organism_scientific 
_pdbx_reference_entity_src_nat.source 
_pdbx_reference_entity_src_nat.db_code 
_pdbx_reference_entity_src_nat.db_name 
_pdbx_reference_entity_src_nat.strain 
PRD_000117 1 1 1931 "Streptomyces sp. Tu 6075" PubMed ?        ?      ? 
PRD_000117 1 2 1931 "STREPTOMYCES TU"          ?      NOR01115 Norine ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000117 2012-02-08 RCSB "Create molecule"    
PRD_000117 2012-07-09 PDBE "Other modification" 
PRD_000117 2012-07-31 RCSB "Other modification" 
PRD_000117 2012-12-12 RCSB "Initial release"    
PRD_000117 2013-06-03 RCSB "Other modification" 
PRD_000117 2017-05-04 RCSB "Other modification" 
PRD_000117 2020-07-29 RCSB "Other modification" 
PRD_000117 2023-09-20 PDBE "Modify audit"       
# 
