data_PRD_001184
# 
_pdbx_reference_molecule.prd_id                       PRD_001184 
_pdbx_reference_molecule.name                         "Dimethyl FK228" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         "Cyclic depsipeptide" 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C26 H42 N4 O6 S2" 
_pdbx_reference_molecule.formula_weight               570.765 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             "ROMIDEPSIN (INN, TRADE NAME ISTODAX), CODENAMED FK228 AND FR901228, IS A NATURAL PRODUCT OBTAINED FROM THE BACTERIA CHROMOBACTERIUM VIOLACEUM, AND WORKS BY BLOCKING ENZYMES KNOWN AS HISTONE DEACETYLASES AND INDUCING APOPTOSIS. DIMETHYL FK228 IS THE REDUCED AND MODIFIED FORM OF ROMIDEPSIN, WHICH DOES NOT HAVE THE DISULFIDE INTRAMOLECULAR LINKAGE, AND BOTH SULFHYDRYL GROUPS ARE METHYLATED." 
_pdbx_reference_molecule.description                  "DIMETHYL FK228 IS THE REDUCED AND MODIFIED FORM OF ROMIDEPSIN. THE DISULFIDE INTRAMOLECULAR LINKAGE OF ROMIDEPSIN IS BROKEN, AND BOTH SULFHYDRYL GROUPS ARE METHYLATED." 
_pdbx_reference_molecule.representative_PDB_id_code   4JNA 
# 
_pdbx_reference_entity_list.prd_id          PRD_001184 
_pdbx_reference_entity_list.ref_entity_id   1 
_pdbx_reference_entity_list.component_id    1 
_pdbx_reference_entity_list.type            polymer 
_pdbx_reference_entity_list.details         ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_001184 1 1 C  1KC 1 N DVA 2 sing 1 ? ? ? 
PRD_001184 1 2 O1 1KC 1 C VAL 5 sing 1 ? ? ? 
PRD_001184 1 3 C  DVA 2 N 060 3 sing 1 ? ? ? 
PRD_001184 1 4 C  060 3 N DBU 4 sing 1 ? ? ? 
PRD_001184 1 5 C  DBU 4 N VAL 5 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_001184 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         ? 
_pdbx_reference_entity_poly.db_name         ? 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_001184 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_001184 1 1 1KC ?   N Y 
PRD_001184 1 2 DVA ?   N Y 
PRD_001184 1 3 060 ?   N Y 
PRD_001184 1 4 DBU THR N Y 
PRD_001184 1 5 VAL VAL N Y 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_001184 2013-10-21 RCSB "Create molecule"    
PRD_001184 2014-02-24 RCSB "Other modification" 
PRD_001184 2014-03-05 RCSB "Initial release"    
PRD_001184 2023-11-03 PDBE "Other modification" 
# 
