data_PRD_000204
# 
_pdbx_reference_molecule.prd_id                       PRD_000204 
_pdbx_reference_molecule.name                         Vancomycin 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Glycopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C66 H75 Cl2 N9 O24" 
_pdbx_reference_molecule.formula_weight               1449.25 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING
TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
;
_pdbx_reference_molecule.description                  "VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4." 
_pdbx_reference_molecule.representative_PDB_id_code   1AA5 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000204 1 1 polymer  . 
PRD_000204 2 2 branched . 
# 
_pdbx_reference_entity_link.prd_id              PRD_000204 
_pdbx_reference_entity_link.link_id             1 
_pdbx_reference_entity_link.link_class          PP 
_pdbx_reference_entity_link.ref_entity_id_1     1 
_pdbx_reference_entity_link.entity_seq_num_1    4 
_pdbx_reference_entity_link.comp_id_1           GHP 
_pdbx_reference_entity_link.atom_id_1           O4 
_pdbx_reference_entity_link.ref_entity_id_2     2 
_pdbx_reference_entity_link.entity_seq_num_2    1 
_pdbx_reference_entity_link.comp_id_2           BGC 
_pdbx_reference_entity_link.atom_id_2           C1 
_pdbx_reference_entity_link.value_order         sing 
_pdbx_reference_entity_link.component_1         1 
_pdbx_reference_entity_link.component_2         2 
_pdbx_reference_entity_link.details             . 
_pdbx_reference_entity_link.nonpoly_res_num_1   ? 
_pdbx_reference_entity_link.nonpoly_res_num_2   ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000204 1 1  C  MLU 1 N   OMZ 2 sing 1 ? ? ? 
PRD_000204 1 2  C  OMZ 2 N   ASN 3 sing 1 ? ? ? 
PRD_000204 1 3  OH OMZ 2 C5  GHP 4 sing 1 ? ? ? 
PRD_000204 1 4  C  ASN 3 N   GHP 4 sing 1 ? ? ? 
PRD_000204 1 5  C  GHP 4 N   GHP 5 sing 1 ? ? ? 
PRD_000204 1 6  C3 GHP 4 OCZ OMY 6 sing 1 ? ? ? 
PRD_000204 1 7  C  GHP 5 N   OMY 6 sing 1 ? ? ? 
PRD_000204 1 8  C3 GHP 5 CG1 3FG 7 sing 1 ? ? ? 
PRD_000204 1 9  C  OMY 6 N   3FG 7 sing 1 ? ? ? 
PRD_000204 2 10 O2 BGC 1 C1  RER 2 sing 2 ? ? ? 
# 
loop_
_pdbx_reference_entity_poly.prd_id 
_pdbx_reference_entity_poly.ref_entity_id 
_pdbx_reference_entity_poly.db_code 
_pdbx_reference_entity_poly.db_name 
_pdbx_reference_entity_poly.type 
PRD_000204 1 NOR00681 NOR peptide-like    
PRD_000204 2 NOR00681 NOR oligosaccharide 
# 
loop_
_pdbx_reference_entity_sequence.prd_id 
_pdbx_reference_entity_sequence.ref_entity_id 
_pdbx_reference_entity_sequence.type 
_pdbx_reference_entity_sequence.NRP_flag 
PRD_000204 1 peptide-like Y 
PRD_000204 2 saccharide   N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000204 1 1 MLU .   N Y 
PRD_000204 1 2 OMZ .   N Y 
PRD_000204 1 3 ASN ASN N Y 
PRD_000204 1 4 GHP .   N Y 
PRD_000204 1 5 GHP .   N Y 
PRD_000204 1 6 OMY TYR N Y 
PRD_000204 1 7 3FG .   N Y 
PRD_000204 2 1 BGC .   N Y 
PRD_000204 2 2 RER .   N Y 
# 
loop_
_pdbx_reference_entity_src_nat.prd_id 
_pdbx_reference_entity_src_nat.ref_entity_id 
_pdbx_reference_entity_src_nat.ordinal 
_pdbx_reference_entity_src_nat.taxid 
_pdbx_reference_entity_src_nat.organism_scientific 
_pdbx_reference_entity_src_nat.source 
_pdbx_reference_entity_src_nat.db_code 
_pdbx_reference_entity_src_nat.db_name 
_pdbx_reference_entity_src_nat.strain 
PRD_000204 1 1 31958 "Streptomyces orientalis"  ? D00212   KEGG   ? 
PRD_000204 1 2 31958 "Amycolatopsis orientalis" ? NOR00681 Norine ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000204 2012-02-01 RCSB "Create molecule"    
PRD_000204 2012-07-09 PDBE "Other modification" 
PRD_000204 2012-12-12 RCSB "Initial release"    
PRD_000204 2013-06-03 RCSB "Other modification" 
PRD_000204 2017-05-04 RCSB "Other modification" 
PRD_000204 2020-07-29 RCSB "Other modification" 
PRD_000204 2021-03-08 RCSB "Other modification" 
PRD_000204 2022-01-06 RCSB "Other modification" 
# 
