data_PRD_002470
# 
_pdbx_reference_molecule.prd_id                       PRD_002470 
_pdbx_reference_molecule.name                         "Agrocinopine A (alpha-L-arabinopyranose form)" 
_pdbx_reference_molecule.represent_as                 branched 
_pdbx_reference_molecule.type                         Oligosaccharide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Nutrient 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C17 H31 O18 P" 
_pdbx_reference_molecule.formula_weight               554.391 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             "A member of the class of agrocinopines that consists of sucrose and L-arabinose units joined via a phosphodiester linkage between position 4F of sucrose and position 2 of arabinose." 
_pdbx_reference_molecule.description                  "phosphodiester of sucrose and L-arabinose" 
_pdbx_reference_molecule.representative_PDB_id_code   4ZEB 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_002470 1 1 branched    .   
PRD_002470 2 2 non-polymer LAO 
# 
_pdbx_reference_entity_nonpoly.prd_id          PRD_002470 
_pdbx_reference_entity_nonpoly.ref_entity_id   2 
_pdbx_reference_entity_nonpoly.name            2-O-phosphono-alpha-L-arabinopyranose 
_pdbx_reference_entity_nonpoly.chem_comp_id    LAO 
_pdbx_reference_entity_nonpoly.details         ? 
# 
_pdbx_reference_entity_link.prd_id              PRD_002470 
_pdbx_reference_entity_link.link_id             1 
_pdbx_reference_entity_link.link_class          PN 
_pdbx_reference_entity_link.ref_entity_id_1     1 
_pdbx_reference_entity_link.entity_seq_num_1    2 
_pdbx_reference_entity_link.comp_id_1           FRU 
_pdbx_reference_entity_link.atom_id_1           O4 
_pdbx_reference_entity_link.ref_entity_id_2     2 
_pdbx_reference_entity_link.entity_seq_num_2    . 
_pdbx_reference_entity_link.comp_id_2           LAO 
_pdbx_reference_entity_link.atom_id_2           P 
_pdbx_reference_entity_link.value_order         sing 
_pdbx_reference_entity_link.component_1         1 
_pdbx_reference_entity_link.component_2         2 
_pdbx_reference_entity_link.details             . 
_pdbx_reference_entity_link.nonpoly_res_num_1   ? 
_pdbx_reference_entity_link.nonpoly_res_num_2   ? 
# 
_pdbx_reference_entity_poly_link.prd_id             PRD_002470 
_pdbx_reference_entity_poly_link.ref_entity_id      1 
_pdbx_reference_entity_poly_link.link_id            1 
_pdbx_reference_entity_poly_link.atom_id_1          C1 
_pdbx_reference_entity_poly_link.comp_id_1          GLC 
_pdbx_reference_entity_poly_link.entity_seq_num_1   1 
_pdbx_reference_entity_poly_link.atom_id_2          O2 
_pdbx_reference_entity_poly_link.comp_id_2          FRU 
_pdbx_reference_entity_poly_link.entity_seq_num_2   2 
_pdbx_reference_entity_poly_link.value_order        sing 
_pdbx_reference_entity_poly_link.component_id       1 
_pdbx_reference_entity_poly_link.details            ? 
_pdbx_reference_entity_poly_link.insert_code_1      ? 
_pdbx_reference_entity_poly_link.insert_code_2      ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_002470 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         . 
_pdbx_reference_entity_poly.db_name         . 
_pdbx_reference_entity_poly.type            oligosaccharide 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_002470 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            saccharide 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_002470 1 1 GLC . N Y 
PRD_002470 1 2 FRU . N Y 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_002470 2023-05-17 PDBE "Create molecule"    
PRD_002470 2023-05-24 RCSB "Initial release"    
PRD_002470 2023-05-24 PDBE "Other modification" 
# 
_pdbx_reference_entity_src_nat.db_code               ? 
_pdbx_reference_entity_src_nat.db_name               ? 
_pdbx_reference_entity_src_nat.ordinal               1 
_pdbx_reference_entity_src_nat.organism_scientific   "Agrobacterium fabrum str. C58" 
_pdbx_reference_entity_src_nat.prd_id                PRD_002470 
_pdbx_reference_entity_src_nat.ref_entity_id         1 
_pdbx_reference_entity_src_nat.source                ? 
_pdbx_reference_entity_src_nat.strain                ? 
_pdbx_reference_entity_src_nat.taxid                 176299 
# 
