data_PRD_002430
# 
_pdbx_reference_molecule.prd_id                       PRD_002430 
_pdbx_reference_molecule.name                         "Darobactin 9" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Peptide-like 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C49 H57 N12 O12" 
_pdbx_reference_molecule.formula_weight               1006.050 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;The native darobactin A producer Photorhabdus khanii HGB1456 shows very limited production under laboratory cultivation conditions. Hence scientists designed heterologous expression of the darobactin biosynthetic gene cluster (BGC) in Escherichia coli. Rational design of darA variant resulted in the production of new 'non-natural' darobactin derivatives. One of the non-natural compounds, darobactin 9, was more potent than darobactin A.
;
_pdbx_reference_molecule.description                  ? 
_pdbx_reference_molecule.representative_PDB_id_code   8ADI 
# 
_pdbx_reference_entity_list.prd_id          PRD_002430 
_pdbx_reference_entity_list.ref_entity_id   1 
_pdbx_reference_entity_list.component_id    1 
_pdbx_reference_entity_list.type            polymer 
_pdbx_reference_entity_list.details         . 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_002430 1 1 C   0AF 1 N  ASN 2 sing 1 ? ? ? 
PRD_002430 1 2 O1  0AF 1 CB TRP 3 sing 1 ? ? ? 
PRD_002430 1 3 C   ASN 2 N  TRP 3 sing 1 ? ? ? 
PRD_002430 1 4 C   TRP 3 N  SER 4 sing 1 ? ? ? 
PRD_002430 1 5 CH2 TRP 3 CB LYS 5 sing 1 ? ? ? 
PRD_002430 1 6 C   SER 4 N  LYS 5 sing 1 ? ? ? 
PRD_002430 1 7 C   LYS 5 N  SER 6 sing 1 ? ? ? 
PRD_002430 1 8 C   SER 6 N  TRP 7 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_002430 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         . 
_pdbx_reference_entity_poly.db_name         . 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_002430 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_002430 1 1 0AF TRP N Y 
PRD_002430 1 2 ASN ASN N Y 
PRD_002430 1 3 TRP TRP N Y 
PRD_002430 1 4 SER SER N Y 
PRD_002430 1 5 LYS LYS N Y 
PRD_002430 1 6 SER SER N Y 
PRD_002430 1 7 TRP TRP N Y 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_002430 2022-10-03 PDBE "Create molecule" 
PRD_002430 2023-01-11 RCSB "Initial release" 
# 
